c2pfam

AT3G45780.1 :

Domain Description Evalue Bits GA Start End
PAS_9 PAS domain 1.1E-20 63 27.00 205 301
PAS_4 PAS fold 3E-06 17 23.10 207 301
PAS_8 PAS domain 0.03 4 21.80 210 235
PAS PAS fold 7E-09 25 22.60 211 296
PAS_3 PAS fold 1.1E-09 28 20.70 212 295
PAS_9 PAS domain 5.1E-23 71 27.00 485 577
PAS_4 PAS fold 0.00025 11 23.10 488 574
PAS PAS fold 4.6E-10 29 22.60 488 577
PAS_8 PAS domain 0.0019 8 21.80 488 516
PAS_3 PAS fold 1.3E-09 28 20.70 489 574
PI3K_rbd PI3-kinase family, ras-binding domain 0.0039 7 20.80 514 545
Pkinase Protein kinase domain 0 210 20.40 665 952
PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase 2.9E-29 91 23.10 667 937
Kinase-like Kinase-like 0.00099 8 25.00 757 808
PI3K_rbd PI3-kinase family, ras-binding domain 0.055 3 20.80 786 860
Kinase-like Kinase-like 0.0018 7 25.00 869 936

996

PAS_9
PAS_4
PAS_8
PAS
PAS_3
PAS_9
PAS_4
PAS
PAS_8
PAS_3
PI3K_rbd
Pkinase
PK_Tyr_Ser-Thr
Kinase-like
PI3K_rbd
Kinase-like

References:

PAS_4
9301332 PAS domain S-boxes in archaea, bacteria and sensors for oxygen and redox. Trends Biochem Sci 1997;22:331-333.
7756254 1.4 A structure of photoactive yellow protein, a cytosolic photoreceptor: unusual fold, active site, and chromophore. Biochemistry 1995;34:6278-6287.
9382818 PAS: a multifunctional domain family comes to light. Curr Biol 1997;7:674-677.
15009198 The PAS fold: a redefination of the PAS domain based upon structural prediction. Eur J Biochem 2004;271:1198-1208.

Pkinase
1956325 Protein kinase catalytic domain sequence database: identification of conserved features of primary structure and classification of family members. Methods Enzymol 1991;200:38-62.
7768349 Protein kinases 6. The eukaryotic protein kinase superfamily: kinase (catalytic) domain structure and classification. FASEB J 1995;9:576-596.
9020587 The protein kinases of budding yeast: six score and more. Trends Biochem Sci 1997;22:18-22.

PAS_9

PAS_8

PI3K_rbd
8665852 Activation of phosphoinositide 3-kinase by interaction with Ras and by point mutation. EMBO J 1996;15:2442-2451.
7820549 The activation of phosphatidylinositol 3-kinase by Ras. Curr Biol 1994;4:798-806.
8052307 Phosphatidylinositol-3-OH kinase as a direct target of Ras. Nature 1994;370:527-532.

PAS_3
9301332 PAS domain S-boxes in archaea, bacteria and sensors for oxygen and redox. Trends Biochem Sci 1997;22:331-333.
7756254 1.4 A structure of photoactive yellow protein, a cytosolic photoreceptor: unusual fold, active site, and chromophore. Biochemistry 1995;34:6278-6287.
9382818 PAS: a multifunctional domain family comes to light. Curr Biol 1997;7:674-677.
15009198 The PAS fold: a redefination of the PAS domain based upon structural prediction. Eur J Biochem 2004;271:1198-1208.

PAS
9301332 PAS domain S-boxes in archaea, bacteria and sensors for oxygen and redox. Trends Biochem Sci 1997;22:331-333.
7756254 1.4 A structure of photoactive yellow protein, a cytosolic photoreceptor: unusual fold, active site, and chromophore. Biochemistry 1995;34:6278-6287.
9382818 PAS: a multifunctional domain family comes to light. Curr Biol 1997;7:674-677.
15009198 The PAS fold: a redefination of the PAS domain based upon structural prediction. Eur J Biochem 2004;271:1198-1208.

PK_Tyr_Ser-Thr

Kinase-like

Domain	Description	Evalue	Bits	GA	Start	End
PAS_9	PAS domain	1.1E-20	63	27.00	205	301
PAS_4	PAS fold	3E-06	17	23.10	207	301
PAS_8	PAS domain	0.03	4	21.80	210	235
PAS	PAS fold	7E-09	25	22.60	211	296
PAS_3	PAS fold	1.1E-09	28	20.70	212	295
PAS_9	PAS domain	5.1E-23	71	27.00	485	577
PAS_4	PAS fold	0.00025	11	23.10	488	574
PAS	PAS fold	4.6E-10	29	22.60	488	577
PAS_8	PAS domain	0.0019	8	21.80	488	516
PAS_3	PAS fold	1.3E-09	28	20.70	489	574
PI3K_rbd	PI3-kinase family, ras-binding domain	0.0039	7	20.80	514	545
Pkinase	Protein kinase domain	0	210	20.40	665	952
PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	2.9E-29	91	23.10	667	937
Kinase-like	Kinase-like	0.00099	8	25.00	757	808
PI3K_rbd	PI3-kinase family, ras-binding domain	0.055	3	20.80	786	860
Kinase-like	Kinase-like	0.0018	7	25.00	869	936