c2pfam

AT3G45900.1 :

Domain Description Evalue Bits GA Start End
LtuB Late transcription unit B 0.00043 11 25.00 16 49
Muted Organelle biogenesis, Muted-like protein 0.00056 10 26.00 18 129
Spc7 Spc7 kinetochore protein 3E-05 13 34.00 47 137
DUF2203 Uncharacterized conserved protein (DUF2203) 0.00011 13 20.80 48 147
Rootletin Ciliary rootlet component, centrosome cohesion 0.0012 9 31.60 51 121
FapA Flagellar Assembly Protein A 0.00038 9 36.70 54 143
Exonuc_VII_L Exonuclease VII, large subunit 0.0011 9 21.70 54 141
DUF4407 Domain of unknown function (DUF4407) 0.005 6 31.30 55 149
Med9 RNA polymerase II transcription mediator complex subunit 9 0.011 6 20.50 55 82
Nup54 Nucleoporin complex subunit 54 0.0091 6 30.50 57 130
Cep57_MT_bd Centrosome microtubule-binding domain of Cep57 0.04 5 31.30 58 83
TPR_MLP1_2 TPR/MLP1/MLP2-like protein 0.0004 11 30.00 65 123
DUF2852 Protein of unknown function (DUF2852) 7.3E-05 13 21.10 67 147
BLOC1_2 Biogenesis of lysosome-related organelles complex-1 subunit 2 0.0002 12 25.00 72 134
GOLGA2L5 Putative golgin subfamily A member 2-like protein 5 5.6E-06 15 27.70 93 146
Cep57_MT_bd Centrosome microtubule-binding domain of Cep57 0.0045 8 31.30 103 152
Glyco_hydro38C2 Glycosyl hydrolases family 38 C-terminal beta sandwich domain 0.0029 8 21.20 104 154
Med9 RNA polymerase II transcription mediator complex subunit 9 0.023 5 20.50 107 141
Rootletin Ciliary rootlet component, centrosome cohesion 0.25 1 31.60 124 352
Spc7 Spc7 kinetochore protein 0.23 0 34.00 220 275
FapA Flagellar Assembly Protein A 0.2 0 36.70 223 293
Muted Organelle biogenesis, Muted-like protein 0.34 1 26.00 226 307
Exonuc_VII_L Exonuclease VII, large subunit 0.0098 6 21.70 245 355
BLOC1_2 Biogenesis of lysosome-related organelles complex-1 subunit 2 0.14 3 25.00 251 283
DUF2203 Uncharacterized conserved protein (DUF2203) 0.51 1 20.80 251 295
Nup54 Nucleoporin complex subunit 54 0.015 6 30.50 274 349
DUF4407 Domain of unknown function (DUF4407) 0.031 4 31.30 288 360
DUF2203 Uncharacterized conserved protein (DUF2203) 0.64 1 20.80 300 352
FapA Flagellar Assembly Protein A 0.52 -1 36.70 302 352
Spc7 Spc7 kinetochore protein 0.27 0 34.00 302 353
TPR_MLP1_2 TPR/MLP1/MLP2-like protein 0.57 0 30.00 303 352
GOLGA2L5 Putative golgin subfamily A member 2-like protein 5 0.52 -1 27.70 322 355
Muted Organelle biogenesis, Muted-like protein 0.79 0 26.00 332 353

389

LtuB
Muted
Spc7
DUF2203
Rootletin
FapA
Exonuc_VII_L
DUF4407
Med9
Nup54
Cep57_MT_bd
TPR_MLP1_2
DUF2852
BLOC1_2
GOLGA2L5
Cep57_MT_bd
Glyco_hydro38C2
Med9
Rootletin
Spc7
FapA
Muted
Exonuc_VII_L
BLOC1_2
DUF2203
Nup54
DUF4407
DUF2203
FapA
Spc7
TPR_MLP1_2
GOLGA2L5
Muted

References:

TPR_MLP1_2
9024684 Identification of protein p270/Tpr as a constitutive component of the nuclear pore complex-attached intranuclear filaments. J Cell Biol 1997;136:515-529.
7798308 Tpr, a large coiled coil protein whose amino terminus is involved in activation of oncogenic kinases, is localized to the cytoplasmic surface of the nuclear pore complex. J Cell Biol 1994;127:1515-1526.
10617624 Mlp2p, a component of nuclear pore attached intranuclear filaments, associates with nic96p. J Biol Chem 2000;275:343-350.
12490156 Myosin-like proteins 1 and 2 are not required for silencing or telomere anchoring, but act in the Tel1 pathway of telomere length control. J Struct Biol 2002;140:79-91.

LtuB

Med9
12584197 Identification of mammalian Mediator subunits with similarities to yeast Mediator subunits Srb5, Srb6, Med11, and Rox3. J Biol Chem 2003;278:15123-15127.
14576168 A mammalian homolog of Drosophila melanogaster transcriptional coactivator intersex is a subunit of the mammalian Mediator complex. J Biol Chem 2003;278:49671-49674.
8336709 CSE1 and CSE2, two new genes required for accurate mitotic chromosome segregation in Saccharomyces cerevisiae. Mol Cell Biol 1993;13:4691-4702.
15175151 A unified nomenclature for protein subunits of mediator complexes linking transcriptional regulators to RNA polymerase II. Mol Cell. 2004;14:553-557.

DUF4407

BLOC1_2
15102850 Identification of snapin and three novel proteins (BLOS1, BLOS2, and BLOS3/reduced pigmentation) as subunits of biogenesis of lysosome-related organelles complex-1 (BLOC-1). J Biol Chem. 2004;279:28393-28401.

Exonuc_VII_L
6284744 Subunit structure of Escherichia coli exonuclease VII. J Biol Chem 1982;257:8799-8805.

Nup54

Rootletin

FapA

GOLGA2L5

DUF2203

DUF2852

Cep57_MT_bd

Glyco_hydro38C2

Spc7
15371542 The fission yeast kinetochore component Spc7 associates with the EB1 family member Mal3 and is required for kinetochore-spindle association. Mol Biol Cell 2004;15:5255-5267.

Muted

Domain	Description	Evalue	Bits	GA	Start	End
LtuB	Late transcription unit B	0.00043	11	25.00	16	49
Muted	Organelle biogenesis, Muted-like protein	0.00056	10	26.00	18	129
Spc7	Spc7 kinetochore protein	3E-05	13	34.00	47	137
DUF2203	Uncharacterized conserved protein (DUF2203)	0.00011	13	20.80	48	147
Rootletin	Ciliary rootlet component, centrosome cohesion	0.0012	9	31.60	51	121
FapA	Flagellar Assembly Protein A	0.00038	9	36.70	54	143
Exonuc_VII_L	Exonuclease VII, large subunit	0.0011	9	21.70	54	141
DUF4407	Domain of unknown function (DUF4407)	0.005	6	31.30	55	149
Med9	RNA polymerase II transcription mediator complex subunit 9	0.011	6	20.50	55	82
Nup54	Nucleoporin complex subunit 54	0.0091	6	30.50	57	130
Cep57_MT_bd	Centrosome microtubule-binding domain of Cep57	0.04	5	31.30	58	83
TPR_MLP1_2	TPR/MLP1/MLP2-like protein	0.0004	11	30.00	65	123
DUF2852	Protein of unknown function (DUF2852)	7.3E-05	13	21.10	67	147
BLOC1_2	Biogenesis of lysosome-related organelles complex-1 subunit 2	0.0002	12	25.00	72	134
GOLGA2L5	Putative golgin subfamily A member 2-like protein 5	5.6E-06	15	27.70	93	146
Cep57_MT_bd	Centrosome microtubule-binding domain of Cep57	0.0045	8	31.30	103	152
Glyco_hydro38C2	Glycosyl hydrolases family 38 C-terminal beta sandwich domain	0.0029	8	21.20	104	154
Med9	RNA polymerase II transcription mediator complex subunit 9	0.023	5	20.50	107	141
Rootletin	Ciliary rootlet component, centrosome cohesion	0.25	1	31.60	124	352
Spc7	Spc7 kinetochore protein	0.23	0	34.00	220	275
FapA	Flagellar Assembly Protein A	0.2	0	36.70	223	293
Muted	Organelle biogenesis, Muted-like protein	0.34	1	26.00	226	307
Exonuc_VII_L	Exonuclease VII, large subunit	0.0098	6	21.70	245	355
BLOC1_2	Biogenesis of lysosome-related organelles complex-1 subunit 2	0.14	3	25.00	251	283
DUF2203	Uncharacterized conserved protein (DUF2203)	0.51	1	20.80	251	295
Nup54	Nucleoporin complex subunit 54	0.015	6	30.50	274	349
DUF4407	Domain of unknown function (DUF4407)	0.031	4	31.30	288	360
DUF2203	Uncharacterized conserved protein (DUF2203)	0.64	1	20.80	300	352
FapA	Flagellar Assembly Protein A	0.52	-1	36.70	302	352
Spc7	Spc7 kinetochore protein	0.27	0	34.00	302	353
TPR_MLP1_2	TPR/MLP1/MLP2-like protein	0.57	0	30.00	303	352
GOLGA2L5	Putative golgin subfamily A member 2-like protein 5	0.52	-1	27.70	322	355
Muted	Organelle biogenesis, Muted-like protein	0.79	0	26.00	332	353