c2pfam

AT3G46060.1 :

Domain Description Evalue Bits GA Start End
Arf ADP-ribosylation factor family 2.3E-18 56 20.30 16 147
Ras Ras family 0 221 20.80 17 178
Roc Ras of Complex, Roc, domain of DAPkinase 4.8E-38 120 27.00 17 132
Gtr1_RagA Gtr1/RagA G protein conserved region 1.3E-07 21 20.10 17 131
PduV-EutP Ethanolamine utilisation - propanediol utilisation 0.00028 11 20.50 17 170
FeoB_N Ferrous iron transport protein B 0.00073 9 21.20 17 169
AAA_16 AAA ATPase domain 9.9E-05 13 32.60 18 43
AAA ATPase family associated with various cellular activities (AAA) 0.009 6 20.80 18 93
AAA_22 AAA domain 0.00037 11 27.00 18 37
SRPRB Signal recognition particle receptor beta subunit 2E-05 14 20.50 18 137
AAA_29 P-loop containing region of AAA domain 8.5E-05 12 27.00 18 32
MMR_HSR1 GTPase of unknown function 4E-08 23 24.50 18 128
RsgA_GTPase RsgA GTPase 0.00027 11 30.00 19 35
GTP_EFTU Elongation factor Tu GTP binding domain 2E-08 24 20.20 49 166
RsgA_GTPase RsgA GTPase 0.00062 10 30.00 111 172
AAA ATPase family associated with various cellular activities (AAA) 0.031 5 20.80 144 205

216

Arf
Ras
Roc
Gtr1_RagA
PduV-EutP
FeoB_N
AAA_16
AAA
AAA_22
SRPRB
AAA_29
MMR_HSR1
RsgA_GTPase
GTP_EFTU
RsgA_GTPase
AAA

References:

AAA_16

GTP_EFTU
9311785 Visualization of elongation factor Tu on the Escherichia coli ribosome. Nature 1997;389:403-406.

SRPRB
7844142 The beta subunit of the signal recognition particle receptor is a transmembrane GTPase that anchors the alpha subunit, a peripheral membrane GTPase, to the endoplasmic reticulum membrane. J Cell Biol. 1995;128:273-282.

RsgA_GTPase

Ras
11387043 The Rab GTPase family. Genome Biol 2001;2:REVIEWS3007.

MMR_HSR1
8180467 Structure and evolution of a member of a new subfamily of GTP-binding proteins mapping to the human MHC class I region. Mamm Genome 1994;5:100-105.

Arf
7990966 Structure of the human ADP-ribosylation factor 1 complexed with GDP. Nature 1994;372:704-708.
7759471 Structure and function of ARF proteins: Activators of cholera toxin and critical components of intracellular vesicular transport processes. J. Biol. Chem. 1995;270:12327-12330.
7770914 Arf proteins: the membrane traffic police? Trends Biochem Sci 1995;20:147-150.
1899243 Human ADP-ribosylation factors. A functionally conserved family of GTP-binding proteins. J Biol Chem 1991;266:2606-2614.

FeoB_N
8407793 Characterization of the ferrous iron uptake system of Escherichia coli. J Bacteriol 1993;175:6212-6219.

Roc

AAA_29

Gtr1_RagA
1620108 Putative GTP-binding protein, Gtr1, associated with the function of the Pho84 inorganic phosphate transporter in Saccharomyces cerevisiae. Mol Cell Biol 1992;12:2958-2966.
7499430 Cloning of a novel family of mammalian GTP-binding proteins (RagA, RagBs, RagB1) with remote similarity to the Ras-related GTPases. J Biol Chem 1995;270:28982-28988.
10388807 Saccharomyces cerevisiae putative G protein, Gtr1p, which forms complexes with itself and a novel protein designated as Gtr2p, negatively regulates the Ran/Gsp1p G protein cycle through Gtr2p. Genetics 1999;152:853-867.
11073942 Novel G proteins, Rag C and Rag D, interact with GTP-binding proteins, Rag A and Rag B. J Biol Chem 2001;276:7246-7257.

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_22

PduV-EutP
15516577 Evidence that a B12-adenosyl transferase is encoded within the ethanolamine operon of Salmonella enterica. J Bacteriol. 2004;186:7635-7644.
10464203 The 17-gene ethanolamine (eut) operon of Salmonella typhimurium encodes five homologues of carboxysome shell proteins. J Bacteriol 1999;181:5317-5329.
10498708 The propanediol utilization (pdu) operon of Salmonella enterica serovar Typhimurium LT2 includes genes necessary for formation of polyhedral organelles involved in coenzyme B(12)-dependent 1, 2-propanediol degradation. J Bacteriol. 1999;181:5967-5975.

Domain	Description	Evalue	Bits	GA	Start	End
Arf	ADP-ribosylation factor family	2.3E-18	56	20.30	16	147
Ras	Ras family	0	221	20.80	17	178
Roc	Ras of Complex, Roc, domain of DAPkinase	4.8E-38	120	27.00	17	132
Gtr1_RagA	Gtr1/RagA G protein conserved region	1.3E-07	21	20.10	17	131
PduV-EutP	Ethanolamine utilisation - propanediol utilisation	0.00028	11	20.50	17	170
FeoB_N	Ferrous iron transport protein B	0.00073	9	21.20	17	169
AAA_16	AAA ATPase domain	9.9E-05	13	32.60	18	43
AAA	ATPase family associated with various cellular activities (AAA)	0.009	6	20.80	18	93
AAA_22	AAA domain	0.00037	11	27.00	18	37
SRPRB	Signal recognition particle receptor beta subunit	2E-05	14	20.50	18	137
AAA_29	P-loop containing region of AAA domain	8.5E-05	12	27.00	18	32
MMR_HSR1	GTPase of unknown function	4E-08	23	24.50	18	128
RsgA_GTPase	RsgA GTPase	0.00027	11	30.00	19	35
GTP_EFTU	Elongation factor Tu GTP binding domain	2E-08	24	20.20	49	166
RsgA_GTPase	RsgA GTPase	0.00062	10	30.00	111	172
AAA	ATPase family associated with various cellular activities (AAA)	0.031	5	20.80	144	205