c2pfam

AT3G46830.1 :

Domain Description Evalue Bits GA Start End
Arf ADP-ribosylation factor family 1.7E-16 50 20.30 13 167
MMR_HSR1 GTPase of unknown function 4.6E-09 27 24.50 14 118
Ras Ras family 0 203 20.80 14 174
Roc Ras of Complex, Roc, domain of DAPkinase 2.4E-36 115 27.00 14 129
SRPRB Signal recognition particle receptor beta subunit 5.2E-06 16 20.50 14 134
Gtr1_RagA Gtr1/RagA G protein conserved region 1.5E-05 15 20.10 14 98
ABC_tran ABC transporter 5.7E-05 14 23.10 14 59
FeoB_N Ferrous iron transport protein B 0.00042 10 21.20 14 71
AAA_7 P-loop containing dynein motor region 0.00011 12 25.80 14 56
NTPase_1 NTPase 0.00013 12 23.90 14 118
AAA_24 AAA domain 0.00016 12 27.00 14 36
AAA_16 AAA ATPase domain 4.4E-05 14 32.60 15 128
AAA_22 AAA domain 9.5E-05 13 27.00 15 53
TniB Bacterial TniB protein 0.00011 12 20.10 15 36
RsgA_GTPase RsgA GTPase 5.1E-05 13 30.00 15 35
GTP_EFTU Elongation factor Tu GTP binding domain 1.6E-05 15 20.20 45 168
TniB Bacterial TniB protein 0.53 0 20.10 94 133
AAA_24 AAA domain 0.79 -1 27.00 99 122
RsgA_GTPase RsgA GTPase 0.029 4 30.00 108 171
Strep_his_triad Streptococcal histidine triad protein 5E-05 13 20.90 147 191

217

Arf
MMR_HSR1
Ras
Roc
SRPRB
Gtr1_RagA
ABC_tran
FeoB_N
AAA_7
NTPase_1
AAA_24
AAA_16
AAA_22
TniB
RsgA_GTPase
GTP_EFTU
TniB
AAA_24
RsgA_GTPase
Strep_his_triad

References:

AAA_16

GTP_EFTU
9311785 Visualization of elongation factor Tu on the Escherichia coli ribosome. Nature 1997;389:403-406.

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

SRPRB
7844142 The beta subunit of the signal recognition particle receptor is a transmembrane GTPase that anchors the alpha subunit, a peripheral membrane GTPase, to the endoplasmic reticulum membrane. J Cell Biol. 1995;128:273-282.

Strep_his_triad
11349048 Recombinant PhpA protein, a unique histidine motif-containing protein from Streptococcus pneumoniae, protects mice against intranasal pneumococcal challenge. Infect Immun 2001;69:3827-3836.

RsgA_GTPase

TniB
8195081 Transposon Tn5090 of plasmid R751, which carries an integron, is related to Tn7, Mu, and the retroelements. J Bacteriol 1994;176:3257-3268.
8594337 Four genes, two ends, and a res region are involved in transposition of Tn5053: a paradigm for a novel family of transposons carrying either a mer operon or an integron. Mol Microbiol 1995;17:1189-1200.

Ras
11387043 The Rab GTPase family. Genome Biol 2001;2:REVIEWS3007.

AAA_7

NTPase_1

MMR_HSR1
8180467 Structure and evolution of a member of a new subfamily of GTP-binding proteins mapping to the human MHC class I region. Mamm Genome 1994;5:100-105.

Arf
7990966 Structure of the human ADP-ribosylation factor 1 complexed with GDP. Nature 1994;372:704-708.
7759471 Structure and function of ARF proteins: Activators of cholera toxin and critical components of intracellular vesicular transport processes. J. Biol. Chem. 1995;270:12327-12330.
7770914 Arf proteins: the membrane traffic police? Trends Biochem Sci 1995;20:147-150.
1899243 Human ADP-ribosylation factors. A functionally conserved family of GTP-binding proteins. J Biol Chem 1991;266:2606-2614.

FeoB_N
8407793 Characterization of the ferrous iron uptake system of Escherichia coli. J Bacteriol 1993;175:6212-6219.

Roc

AAA_24

AAA_22

Gtr1_RagA
1620108 Putative GTP-binding protein, Gtr1, associated with the function of the Pho84 inorganic phosphate transporter in Saccharomyces cerevisiae. Mol Cell Biol 1992;12:2958-2966.
7499430 Cloning of a novel family of mammalian GTP-binding proteins (RagA, RagBs, RagB1) with remote similarity to the Ras-related GTPases. J Biol Chem 1995;270:28982-28988.
10388807 Saccharomyces cerevisiae putative G protein, Gtr1p, which forms complexes with itself and a novel protein designated as Gtr2p, negatively regulates the Ran/Gsp1p G protein cycle through Gtr2p. Genetics 1999;152:853-867.
11073942 Novel G proteins, Rag C and Rag D, interact with GTP-binding proteins, Rag A and Rag B. J Biol Chem 2001;276:7246-7257.

Domain	Description	Evalue	Bits	GA	Start	End
Arf	ADP-ribosylation factor family	1.7E-16	50	20.30	13	167
MMR_HSR1	GTPase of unknown function	4.6E-09	27	24.50	14	118
Ras	Ras family	0	203	20.80	14	174
Roc	Ras of Complex, Roc, domain of DAPkinase	2.4E-36	115	27.00	14	129
SRPRB	Signal recognition particle receptor beta subunit	5.2E-06	16	20.50	14	134
Gtr1_RagA	Gtr1/RagA G protein conserved region	1.5E-05	15	20.10	14	98
ABC_tran	ABC transporter	5.7E-05	14	23.10	14	59
FeoB_N	Ferrous iron transport protein B	0.00042	10	21.20	14	71
AAA_7	P-loop containing dynein motor region	0.00011	12	25.80	14	56
NTPase_1	NTPase	0.00013	12	23.90	14	118
AAA_24	AAA domain	0.00016	12	27.00	14	36
AAA_16	AAA ATPase domain	4.4E-05	14	32.60	15	128
AAA_22	AAA domain	9.5E-05	13	27.00	15	53
TniB	Bacterial TniB protein	0.00011	12	20.10	15	36
RsgA_GTPase	RsgA GTPase	5.1E-05	13	30.00	15	35
GTP_EFTU	Elongation factor Tu GTP binding domain	1.6E-05	15	20.20	45	168
TniB	Bacterial TniB protein	0.53	0	20.10	94	133
AAA_24	AAA domain	0.79	-1	27.00	99	122
RsgA_GTPase	RsgA GTPase	0.029	4	30.00	108	171
Strep_his_triad	Streptococcal histidine triad protein	5E-05	13	20.90	147	191