c2pfam

AT3G47460.1 :

Domain Description Evalue Bits GA Start End
SMC_N RecF/RecN/SMC N terminal domain 0 208 40.00 2 1158
AAA_23 AAA domain 3.4E-06 18 27.00 8 245
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 2.5E-07 21 27.00 27 73
AAA_29 P-loop containing region of AAA domain 2.5E-06 18 27.00 28 49
ABC_tran ABC transporter 0.0011 10 23.10 29 50
Taxilin Myosin-like coiled-coil protein 1 -1 26.00 175 201
CENP-F_leu_zip Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 0.54 1 30.00 176 219
CC2-LZ Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator 0.86 1 35.30 179 201
NPV_P10 Nucleopolyhedrovirus P10 protein 0.0061 8 29.80 179 208
Spc7 Spc7 kinetochore protein 0.033 4 34.00 181 318
MbeD_MobD MbeD/MobD like 0.03 5 21.10 199 229
CC2-LZ Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator 0.056 4 35.30 241 285
Gp58 gp58-like protein 0.0064 5 30.00 248 353
CENP-F_leu_zip Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 0.23 2 30.00 251 303
DUF724 Protein of unknown function (DUF724) 0.09 3 23.40 251 310
Taxilin Myosin-like coiled-coil protein 1E-06 19 26.00 253 466
BST2 Bone marrow stromal antigen 2 0.16 3 27.00 254 286
Spike_torovirin Torovirinae spike glycoprotein 0.0015 7 35.00 256 324
FUSC Fusaric acid resistance protein family 0.0028 7 30.90 260 385
Baculo_PEP_C Baculovirus polyhedron envelope protein, PEP, C terminus 4.8E-05 14 38.00 261 331
PspA_IM30 PspA/IM30 family 9.3E-07 19 30.00 271 448
Fez1 Fez1 0.0024 9 25.00 271 377
MbeD_MobD MbeD/MobD like 0.004 8 21.10 281 312
CENP-F_leu_zip Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 0.0028 8 30.00 294 380
LPP Repeated sequence found in lipoprotein LPP 0.019 6 21.00 295 312
NPV_P10 Nucleopolyhedrovirus P10 protein 0.0014 10 29.80 295 350
Spc7 Spc7 kinetochore protein 0.00045 10 34.00 296 379
BST2 Bone marrow stromal antigen 2 0.0013 10 27.00 309 380
Spc7 Spc7 kinetochore protein 0.00066 9 34.00 326 460
CC2-LZ Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator 0.16 3 35.30 328 374
DUF724 Protein of unknown function (DUF724) 0.12 3 23.40 329 374
BST2 Bone marrow stromal antigen 2 0.0065 8 27.00 382 458
CC2-LZ Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator 0.028 5 35.30 390 430
DUF724 Protein of unknown function (DUF724) 1.2E-05 16 23.40 390 466
CENP-F_leu_zip Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 0.027 5 30.00 394 504
Fez1 Fez1 2.9E-05 15 25.00 395 517
Spc7 Spc7 kinetochore protein 0.0015 8 34.00 396 548
Gp58 gp58-like protein 0.13 1 30.00 408 466
Baculo_PEP_C Baculovirus polyhedron envelope protein, PEP, C terminus 0.6 1 38.00 410 451
LPP Repeated sequence found in lipoprotein LPP 0.016 6 21.00 413 443
CC2-LZ Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator 0.45 2 35.30 415 505
Baculo_PEP_C Baculovirus polyhedron envelope protein, PEP, C terminus 0.68 1 38.00 471 514
NPV_P10 Nucleopolyhedrovirus P10 protein 0.46 2 29.80 490 505
SMC_hinge SMC proteins Flexible Hinge Domain 3.8E-25 79 21.60 518 635
FUSC Fusaric acid resistance protein family 0.0028 7 30.90 659 851
NPV_P10 Nucleopolyhedrovirus P10 protein 0.00039 11 29.80 670 715
Fez1 Fez1 0.0083 7 25.00 670 822
Spc7 Spc7 kinetochore protein 0.0048 6 34.00 670 802
Baculo_PEP_C Baculovirus polyhedron envelope protein, PEP, C terminus 0.028 5 38.00 671 720
CC2-LZ Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator 0.37 2 35.30 675 716
PspA_IM30 PspA/IM30 family 0.62 0 30.00 679 714
Gp58 gp58-like protein 1.1E-06 18 30.00 693 798
Spike_torovirin Torovirinae spike glycoprotein 0.035 2 35.00 717 852
LPP Repeated sequence found in lipoprotein LPP 0.23 2 21.00 735 755
BST2 Bone marrow stromal antigen 2 3.3E-07 21 27.00 738 807
CC2-LZ Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator 4.2E-06 18 35.30 739 838
ABC_tran ABC transporter 0.94 1 23.10 769 868
Fez1 Fez1 0.0087 7 25.00 778 848
CENP-F_leu_zip Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 3.9E-06 17 30.00 780 871
Baculo_PEP_C Baculovirus polyhedron envelope protein, PEP, C terminus 3.1E-05 15 38.00 786 853
Spc7 Spc7 kinetochore protein 2.8E-05 14 34.00 793 927
FUSC Fusaric acid resistance protein family 0.037 3 30.90 819 899
MbeD_MobD MbeD/MobD like 0.092 4 21.10 822 849
BST2 Bone marrow stromal antigen 2 0.95 1 27.00 824 856
DUF724 Protein of unknown function (DUF724) 0.066 4 23.40 825 921
LPP Repeated sequence found in lipoprotein LPP 0.0014 10 21.00 831 862
Taxilin Myosin-like coiled-coil protein 0.0042 7 26.00 841 921
NPV_P10 Nucleopolyhedrovirus P10 protein 0.17 3 29.80 847 900
PspA_IM30 PspA/IM30 family 0.12 2 30.00 958 1016
Spc7 Spc7 kinetochore protein 0.0047 6 34.00 959 1027
ABC_tran ABC transporter 8.3E-06 17 23.10 976 1110
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 2E-07 22 27.00 1067 1139

1171

SMC_N
AAA_23
AAA_21
AAA_29
ABC_tran
Taxilin
CENP-F_leu_zip
CC2-LZ
NPV_P10
Spc7
MbeD_MobD
CC2-LZ
Gp58
CENP-F_leu_zip
DUF724
Taxilin
BST2
Spike_torovirin
FUSC
Baculo_PEP_C
PspA_IM30
Fez1
MbeD_MobD
CENP-F_leu_zip
LPP
NPV_P10
Spc7
BST2
Spc7
CC2-LZ
DUF724
BST2
CC2-LZ
DUF724
CENP-F_leu_zip
Fez1
Spc7
Gp58
Baculo_PEP_C
LPP
CC2-LZ
Baculo_PEP_C
NPV_P10
SMC_hinge
FUSC
NPV_P10
Fez1
Spc7
Baculo_PEP_C
CC2-LZ
PspA_IM30
Gp58
Spike_torovirin
LPP
BST2
CC2-LZ
ABC_tran
Fez1
CENP-F_leu_zip
Baculo_PEP_C
Spc7
FUSC
MbeD_MobD
BST2
DUF724
LPP
Taxilin
NPV_P10
PspA_IM30
Spc7
ABC_tran
AAA_21

References:

Gp58
7828907 Characterization of the genome region encoding structural proteins of Lactobacillus delbrueckii subsp. lactis bacteriophage LL-H. Gene 1994;151:53-59.

NPV_P10
9634101 The single-nucleocapsid nucleopolyhedrovirus of Buzura suppressaria encodes a P10 protein. J Gen Virol 1998;79:1553-1562.

Spike_torovirin

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

DUF724

Fez1
10097140 The FEZ1 gene at chromosome 8p22 encodes a leucine-zipper protein, and its expression is altered in multiple human tumors. Proc Natl Acad Sci U S A 1999;96:3928-3933.
11504921 FEZ1/LZTS1 gene at 8p22 suppresses cancer cell growth and regulates mitosis. Proc Natl Acad Sci U S A 2001;98:10374-10379.

MbeD_MobD
2671664 Characterization of the ColE1 mobilization region and its protein products. Mol Gen Genet 1989;217:488-498.

PspA_IM30
10629175 The PspA protein of Escherichia coli is a negative regulator of sigma(54)-dependent transcription. J Bacteriol 2000;182:311-319.
12079332 Mechanism of Action of the Escherichia coli Phage Shock Protein PspA in Repression of the AAA Family Transcription Factor PspF. J Mol Biol 2002;320:23-37.

CC2-LZ

AAA_23

Taxilin
12558796 Taxilin; a novel syntaxin-binding protein that is involved in Ca2+-dependent exocytosis in neuroendocrine cells. Genes Cells. 2003;8:17-28.
16831913 Inhibition of ATF4 transcriptional activity by FIAT/gamma-taxilin modulates bone mass accrual. Ann N Y Acad Sci. 2006;1068:131-142.

FUSC
1370369 Molecular cloning and characterization of the fusaric acid-resistance gene from Pseudomonas cepacia. Agric Biol Chem 1991;55:1913-1918.

LPP

AAA_29

BST2

SMC_N
10429180 Structural maintenance of chromosomes (SMC) proteins: conserved molecular properties for multiple biological functions. Eur J Biochem 1999;263:6-13.
9640531 SMC protein complexes and higher-order chromosome dynamics. Curr Opin Cell Biol 1998;10:317-322.

CENP-F_leu_zip
7542657 CENP-F is a protein of the nuclear matrix that assembles onto kinetochores at late G2 and is rapidly degraded after mitosis. J Cell Biol. 1995;130:507-518.
14555653 LEK1 is a potential inhibitor of pocket protein-mediated cellular processes. J Biol Chem. 2004;279:664-676.

SMC_hinge
12411491 Hinge-mediated dimerization of SMC protein is essential for its dynamic interaction with DNA. EMBO J 2002;21:5733-5744.

AAA_21

Spc7
15371542 The fission yeast kinetochore component Spc7 associates with the EB1 family member Mal3 and is required for kinetochore-spindle association. Mol Biol Cell 2004;15:5255-5267.

Baculo_PEP_C
8176372 Orgyia pseudotsugata baculovirus p10 and polyhedron envelope protein genes: analysis of their relative expression levels and role in polyhedron structure. J Gen Virol 1994;75:1115-1123.

Domain	Description	Evalue	Bits	GA	Start	End
SMC_N	RecF/RecN/SMC N terminal domain	0	208	40.00	2	1158
AAA_23	AAA domain	3.4E-06	18	27.00	8	245
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	2.5E-07	21	27.00	27	73
AAA_29	P-loop containing region of AAA domain	2.5E-06	18	27.00	28	49
ABC_tran	ABC transporter	0.0011	10	23.10	29	50
Taxilin	Myosin-like coiled-coil protein	1	-1	26.00	175	201
CENP-F_leu_zip	Leucine-rich repeats of kinetochore protein Cenp-F/LEK1	0.54	1	30.00	176	219
CC2-LZ	Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator	0.86	1	35.30	179	201
NPV_P10	Nucleopolyhedrovirus P10 protein	0.0061	8	29.80	179	208
Spc7	Spc7 kinetochore protein	0.033	4	34.00	181	318
MbeD_MobD	MbeD/MobD like	0.03	5	21.10	199	229
CC2-LZ	Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator	0.056	4	35.30	241	285
Gp58	gp58-like protein	0.0064	5	30.00	248	353
CENP-F_leu_zip	Leucine-rich repeats of kinetochore protein Cenp-F/LEK1	0.23	2	30.00	251	303
DUF724	Protein of unknown function (DUF724)	0.09	3	23.40	251	310
Taxilin	Myosin-like coiled-coil protein	1E-06	19	26.00	253	466
BST2	Bone marrow stromal antigen 2	0.16	3	27.00	254	286
Spike_torovirin	Torovirinae spike glycoprotein	0.0015	7	35.00	256	324
FUSC	Fusaric acid resistance protein family	0.0028	7	30.90	260	385
Baculo_PEP_C	Baculovirus polyhedron envelope protein, PEP, C terminus	4.8E-05	14	38.00	261	331
PspA_IM30	PspA/IM30 family	9.3E-07	19	30.00	271	448
Fez1	Fez1	0.0024	9	25.00	271	377
MbeD_MobD	MbeD/MobD like	0.004	8	21.10	281	312
CENP-F_leu_zip	Leucine-rich repeats of kinetochore protein Cenp-F/LEK1	0.0028	8	30.00	294	380
LPP	Repeated sequence found in lipoprotein LPP	0.019	6	21.00	295	312
NPV_P10	Nucleopolyhedrovirus P10 protein	0.0014	10	29.80	295	350
Spc7	Spc7 kinetochore protein	0.00045	10	34.00	296	379
BST2	Bone marrow stromal antigen 2	0.0013	10	27.00	309	380
Spc7	Spc7 kinetochore protein	0.00066	9	34.00	326	460
CC2-LZ	Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator	0.16	3	35.30	328	374
DUF724	Protein of unknown function (DUF724)	0.12	3	23.40	329	374
BST2	Bone marrow stromal antigen 2	0.0065	8	27.00	382	458
CC2-LZ	Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator	0.028	5	35.30	390	430
DUF724	Protein of unknown function (DUF724)	1.2E-05	16	23.40	390	466
CENP-F_leu_zip	Leucine-rich repeats of kinetochore protein Cenp-F/LEK1	0.027	5	30.00	394	504
Fez1	Fez1	2.9E-05	15	25.00	395	517
Spc7	Spc7 kinetochore protein	0.0015	8	34.00	396	548
Gp58	gp58-like protein	0.13	1	30.00	408	466
Baculo_PEP_C	Baculovirus polyhedron envelope protein, PEP, C terminus	0.6	1	38.00	410	451
LPP	Repeated sequence found in lipoprotein LPP	0.016	6	21.00	413	443
CC2-LZ	Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator	0.45	2	35.30	415	505
Baculo_PEP_C	Baculovirus polyhedron envelope protein, PEP, C terminus	0.68	1	38.00	471	514
NPV_P10	Nucleopolyhedrovirus P10 protein	0.46	2	29.80	490	505
SMC_hinge	SMC proteins Flexible Hinge Domain	3.8E-25	79	21.60	518	635
FUSC	Fusaric acid resistance protein family	0.0028	7	30.90	659	851
NPV_P10	Nucleopolyhedrovirus P10 protein	0.00039	11	29.80	670	715
Fez1	Fez1	0.0083	7	25.00	670	822
Spc7	Spc7 kinetochore protein	0.0048	6	34.00	670	802
Baculo_PEP_C	Baculovirus polyhedron envelope protein, PEP, C terminus	0.028	5	38.00	671	720
CC2-LZ	Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator	0.37	2	35.30	675	716
PspA_IM30	PspA/IM30 family	0.62	0	30.00	679	714
Gp58	gp58-like protein	1.1E-06	18	30.00	693	798
Spike_torovirin	Torovirinae spike glycoprotein	0.035	2	35.00	717	852
LPP	Repeated sequence found in lipoprotein LPP	0.23	2	21.00	735	755
BST2	Bone marrow stromal antigen 2	3.3E-07	21	27.00	738	807
CC2-LZ	Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator	4.2E-06	18	35.30	739	838
ABC_tran	ABC transporter	0.94	1	23.10	769	868
Fez1	Fez1	0.0087	7	25.00	778	848
CENP-F_leu_zip	Leucine-rich repeats of kinetochore protein Cenp-F/LEK1	3.9E-06	17	30.00	780	871
Baculo_PEP_C	Baculovirus polyhedron envelope protein, PEP, C terminus	3.1E-05	15	38.00	786	853
Spc7	Spc7 kinetochore protein	2.8E-05	14	34.00	793	927
FUSC	Fusaric acid resistance protein family	0.037	3	30.90	819	899
MbeD_MobD	MbeD/MobD like	0.092	4	21.10	822	849
BST2	Bone marrow stromal antigen 2	0.95	1	27.00	824	856
DUF724	Protein of unknown function (DUF724)	0.066	4	23.40	825	921
LPP	Repeated sequence found in lipoprotein LPP	0.0014	10	21.00	831	862
Taxilin	Myosin-like coiled-coil protein	0.0042	7	26.00	841	921
NPV_P10	Nucleopolyhedrovirus P10 protein	0.17	3	29.80	847	900
PspA_IM30	PspA/IM30 family	0.12	2	30.00	958	1016
Spc7	Spc7 kinetochore protein	0.0047	6	34.00	959	1027
ABC_tran	ABC transporter	8.3E-06	17	23.10	976	1110
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	2E-07	22	27.00	1067	1139