c2pfam

AT3G48870.1 :

Domain Description Evalue Bits GA Start End
Clp_N Clp amino terminal domain 1.4E-18 58 20.70 129 181
Clp_N Clp amino terminal domain 3.9E-21 67 20.70 205 256
AAA_16 AAA ATPase domain 2.1E-07 23 32.60 297 342
Sigma54_activat Sigma-54 interaction domain 0.0005 11 20.20 298 399
ResIII Type III restriction enzyme, res subunit 0.045 5 20.90 300 342
Mg_chelatase Magnesium chelatase, subunit ChlI 0.00059 11 20.30 301 356
TsaE Threonylcarbamoyl adenosine biosynthesis protein TsaE 0.0064 8 26.60 304 341
RsgA_GTPase RsgA GTPase 0.032 6 30.00 305 339
DUF815 Protein of unknown function (DUF815) 0.18 3 20.10 307 342
VirE Virulence-associated protein E 0.11 3 21.50 314 353
IstB_IS21 IstB-like ATP binding protein 0.001 10 24.10 314 341
AAA_22 AAA domain 0.00012 14 27.00 315 400
AAA_7 P-loop containing dynein motor region 0.0087 7 25.80 315 341
AAA_29 P-loop containing region of AAA domain 0.27 3 27.00 316 332
AAA_24 AAA domain 0.0094 7 27.00 318 338
Roc Ras of Complex, Roc, domain of DAPkinase 0.0054 9 27.00 320 350
AAA_28 AAA domain 0.014 7 27.00 320 345
RuvB_N Holliday junction DNA helicase ruvB N-terminus 0.021 6 20.00 320 341
AAA_2 AAA domain (Cdc48 subfamily) 0.007 8 20.60 320 396
AAA ATPase family associated with various cellular activities (AAA) 1.7E-16 52 20.80 320 436
AAA_5 AAA domain (dynein-related subfamily) 6.2E-07 21 20.80 320 398
RNA_helicase RNA helicase 0.0029 10 21.50 320 342
NACHT NACHT domain 3.6E-05 15 20.40 320 348
AAA_18 AAA domain 0.0002 14 29.40 320 390
MMR_HSR1 GTPase of unknown function 0.06 5 24.50 320 353
NTPase_1 NTPase 0.026 6 23.90 321 345
AAA_14 AAA domain 0.00068 11 27.00 321 401
AAA_25 AAA domain 6.5E-05 14 27.00 321 396
Zeta_toxin Zeta toxin 0.076 4 20.10 321 341
AAA_33 AAA domain 0.015 7 27.00 321 341
TIP49 TIP49 C-terminus 0.005 8 23.80 321 351
ABC_tran ABC transporter 0.16 4 23.10 321 348
AAA_3 ATPase family associated with various cellular activities (AAA) 0.13 4 21.10 322 341
CbiA CobQ/CobB/MinD/ParA nucleotide binding domain 0.41 2 21.70 326 342
TniB Bacterial TniB protein 4E-07 21 20.10 362 456
NADH-UOR_E putative NADH-ubiquinone oxidoreductase chain E 0.0046 9 25.00 369 397
AAA_16 AAA ATPase domain 0.84 2 32.60 372 398
ResIII Type III restriction enzyme, res subunit 0.26 3 20.90 378 404
VirE Virulence-associated protein E 0.24 2 21.50 426 464
AAA_lid_9 AAA lid domain 3.1E-37 118 22.80 458 556
TniB Bacterial TniB protein 0.48 1 20.10 460 530
T2SSE Type II/IV secretion system protein 0.00016 12 24.90 512 702
Takusan Takusan 0.00016 13 28.00 519 560
YlqD YlqD protein 0.012 8 27.00 520 586
UVR UvrB/uvrC motif 2.7E-09 28 20.50 532 566
Torsin Torsin 0.00026 13 20.90 617 684
VirE Virulence-associated protein E 0.003 9 21.50 619 687
DUF815 Protein of unknown function (DUF815) 0.0059 7 20.10 624 705
TIP49 TIP49 C-terminus 0.69 1 23.80 630 681
RuvB_N Holliday junction DNA helicase ruvB N-terminus 0.0073 8 20.00 631 681
AAA_16 AAA ATPase domain 0.00013 14 32.60 631 684
Sigma54_activat Sigma-54 interaction domain 4.9E-08 24 20.20 633 763
ResIII Type III restriction enzyme, res subunit 0.0041 9 20.90 634 687
Zeta_toxin Zeta toxin 0.00019 12 20.10 653 702
TsaE Threonylcarbamoyl adenosine biosynthesis protein TsaE 0.033 6 26.60 654 682
DNA_pol3_delta2 DNA polymerase III, delta subunit 0.0021 10 27.00 656 688
AAA_2 AAA domain (Cdc48 subfamily) 0 185 20.60 657 831
Mg_chelatase Magnesium chelatase, subunit ChlI 0.014 6 20.30 661 681
AAA_7 P-loop containing dynein motor region 0.018 6 25.80 661 708
RsgA_GTPase RsgA GTPase 0.0038 9 30.00 662 681
AAA_28 AAA domain 0.0044 9 27.00 662 682
IstB_IS21 IstB-like ATP binding protein 0.0016 10 24.10 662 681
AAA_5 AAA domain (dynein-related subfamily) 8.2E-14 43 20.80 662 783
AAA_23 AAA domain 0.0027 10 27.00 662 791
AAA_29 P-loop containing region of AAA domain 0.02 6 27.00 662 681
NTPase_1 NTPase 0.25 3 23.90 663 680
CbiA CobQ/CobB/MinD/ParA nucleotide binding domain 0.21 3 21.70 663 683
MMR_HSR1 GTPase of unknown function 0.16 4 24.50 663 680
AAA ATPase family associated with various cellular activities (AAA) 3.2E-09 29 20.80 663 783
AAA_22 AAA domain 0.011 8 27.00 663 681
RNA_helicase RNA helicase 0.0021 10 21.50 663 682
AAA_25 AAA domain 0.11 4 27.00 663 682
NACHT NACHT domain 0.04 5 20.40 663 824
AAA_14 AAA domain 0.00086 11 27.00 663 758
AAA_33 AAA domain 0.0079 8 27.00 663 703
Roc Ras of Complex, Roc, domain of DAPkinase 0.17 4 27.00 664 695
ABC_tran ABC transporter 0.005 9 23.10 664 698
AAA_18 AAA domain 0.0015 11 29.40 664 681
AAA_24 AAA domain 0.024 6 27.00 665 753
AAA_22 AAA domain 1 1 27.00 722 757
DNA_pol3_delta2 DNA polymerase III, delta subunit 0.9 1 27.00 731 757
AAA_3 ATPase family associated with various cellular activities (AAA) 0.0032 9 21.10 733 779
YlqD YlqD protein 0.32 3 27.00 809 874
TIP49 TIP49 C-terminus 0.051 4 23.80 834 932
ClpB_D2-small C-terminal, D2-small domain, of ClpB protein 1.5E-25 81 21.40 838 918
MazE_antitoxin Antidote-toxin recognition MazE, bacterial antitoxin 0.0031 9 24.70 901 928

952

Clp_N
Clp_N
AAA_16
Sigma54_activat
ResIII
Mg_chelatase
TsaE
RsgA_GTPase
DUF815
VirE
IstB_IS21
AAA_22
AAA_7
AAA_29
AAA_24
Roc
AAA_28
RuvB_N
AAA_2
AAA
AAA_5
RNA_helicase
NACHT
AAA_18
MMR_HSR1
NTPase_1
AAA_14
AAA_25
Zeta_toxin
AAA_33
TIP49
ABC_tran
AAA_3
CbiA
TniB
NADH-UOR_E
AAA_16
ResIII
VirE
AAA_lid_9
TniB
T2SSE
Takusan
YlqD
UVR
Torsin
VirE
DUF815
TIP49
RuvB_N
AAA_16
Sigma54_activat
ResIII
Zeta_toxin
TsaE
DNA_pol3_delta2
AAA_2
Mg_chelatase
AAA_7
RsgA_GTPase
AAA_28
IstB_IS21
AAA_5
AAA_23
AAA_29
NTPase_1
CbiA
MMR_HSR1
AAA
AAA_22
RNA_helicase
AAA_25
NACHT
AAA_14
AAA_33
Roc
ABC_tran
AAA_18
AAA_24
AAA_22
DNA_pol3_delta2
AAA_3
YlqD
TIP49
ClpB_D2-small
MazE_antitoxin

References:

MMR_HSR1
8180467 Structure and evolution of a member of a new subfamily of GTP-binding proteins mapping to the human MHC class I region. Mamm Genome 1994;5:100-105.

AAA_5
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_3
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_2
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

DNA_pol3_delta2

Zeta_toxin
12571357 Crystal structure of the plasmid maintenance system epsilon/zeta: functional mechanism of toxin zeta and inactivation by epsilon 2 zeta 2 complex formation. Proc Natl Acad Sci U S A 2003;100:1661-1666.

TniB
8195081 Transposon Tn5090 of plasmid R751, which carries an integron, is related to Tn7, Mu, and the retroelements. J Bacteriol 1994;176:3257-3268.
8594337 Four genes, two ends, and a res region are involved in transposition of Tn5053: a paradigm for a novel family of transposons carrying either a mer operon or an integron. Mol Microbiol 1995;17:1189-1200.

TsaE

YlqD

UVR

ClpB_D2-small
14567920 The structure of ClpB: a molecular chaperone that rescues proteins from an aggregated state. Cell. 2003;115:229-240.

ResIII

IstB_IS21

RNA_helicase
2546125 Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res 1989;17:4713-4730.

CbiA
9742225 Cobalamin (vitamin B12) biosynthesis: identification and characterization of a Bacillus megaterium cobI operon. Biochem J 1998;335:159-166.
9742226 Cobalamin (vitamin B12) biosynthesis: functional characterization of the Bacillus megaterium cbi genes required to convert uroporphyrinogen III into cobyrinic acid a,c-diamide. Biochem J 1998;335:167-173.
7635831 Identification and sequence analysis of genes involved in late steps in cobalamin (vitamin B12) synthesis in Rhodobacter capsulatus. J Bacteriol 1995;177:4481-4487.
8501034 Characterization of the cobalamin (vitamin B12) biosynthetic genes of Salmonella typhimurium. J Bacteriol 1993;175:3303-3316.
10966576 The synthetase domains of cobalamin biosynthesis amidotransferases cobB and cobQ belong to a new family of ATP-dependent amidoligases, related to dethiobiotin synthetase. Proteins 2000;41:238-247.
2149583 A family of ATPases involved in active partitioning of diverse bacterial plasmids. Mol Microbiol 1990;4:1455-1463.

VirE

NTPase_1

Clp_N
10982797 Structure and activity of ClpB from Escherichia coli. Role of the amino-and -carboxyl-terminal domains. J Biol Chem 2000;275:37565-37571.

DUF815

TIP49
12464178 Reptin and pontin antagonistically regulate heart growth in zebrafish embryos. Cell 2002;111:661-672.
10902922 Chromosome mapping and expression of human tip49 family genes. DNA Seq 2000;11:145-148.

RuvB_N
12423347 The RuvABC resolvasome. Eur J Biochem 2002;269:5492-5501.

AAA_7

Roc

NACHT
10782090 The NACHT family - a new group of predicted NTPases implicated in apoptosis and MHC transcription activation. Trends Biochem Sci 2000;25:223-224.

AAA_33

AAA_23

AAA_29

AAA_28

Sigma54_activat
11544185 Binding of transcriptional activators to sigma 54 in the presence of the transition state analog ADP-aluminum fluoride: insights into activator mechanochemical action. Genes Dev 2001;15:2282-2294.
12618438 Domain Architectures of sigma(54)-Dependent Transcriptional Activators. J Bacteriol 2003;185:1757-1767.

AAA_25

AAA_24

T2SSE

AAA_22

AAA_18

AAA_16

AAA_14

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

AAA_lid_9

Mg_chelatase
9359397 Mechanism and regulation of Mg-chelatase. Biochem J 1997;327:321-333.
9457877 Reconstitution of an active magnesium chelatase enzyme complex from the bchI, -D, and -H gene products of the green sulfur bacterium Chlorobium vibrioforme expressed in Escherichia coli. J Bacteriol 1998;180:699-704.

NADH-UOR_E

Torsin
12554684 Suppression of polyglutamine-induced protein aggregation in Caenorhabditis elegans by torsin proteins. Hum Mol Genet 2003;12:307-319.

MazE_antitoxin

Takusan

RsgA_GTPase

Domain	Description	Evalue	Bits	GA	Start	End
Clp_N	Clp amino terminal domain	1.4E-18	58	20.70	129	181
Clp_N	Clp amino terminal domain	3.9E-21	67	20.70	205	256
AAA_16	AAA ATPase domain	2.1E-07	23	32.60	297	342
Sigma54_activat	Sigma-54 interaction domain	0.0005	11	20.20	298	399
ResIII	Type III restriction enzyme, res subunit	0.045	5	20.90	300	342
Mg_chelatase	Magnesium chelatase, subunit ChlI	0.00059	11	20.30	301	356
TsaE	Threonylcarbamoyl adenosine biosynthesis protein TsaE	0.0064	8	26.60	304	341
RsgA_GTPase	RsgA GTPase	0.032	6	30.00	305	339
DUF815	Protein of unknown function (DUF815)	0.18	3	20.10	307	342
VirE	Virulence-associated protein E	0.11	3	21.50	314	353
IstB_IS21	IstB-like ATP binding protein	0.001	10	24.10	314	341
AAA_22	AAA domain	0.00012	14	27.00	315	400
AAA_7	P-loop containing dynein motor region	0.0087	7	25.80	315	341
AAA_29	P-loop containing region of AAA domain	0.27	3	27.00	316	332
AAA_24	AAA domain	0.0094	7	27.00	318	338
Roc	Ras of Complex, Roc, domain of DAPkinase	0.0054	9	27.00	320	350
AAA_28	AAA domain	0.014	7	27.00	320	345
RuvB_N	Holliday junction DNA helicase ruvB N-terminus	0.021	6	20.00	320	341
AAA_2	AAA domain (Cdc48 subfamily)	0.007	8	20.60	320	396
AAA	ATPase family associated with various cellular activities (AAA)	1.7E-16	52	20.80	320	436
AAA_5	AAA domain (dynein-related subfamily)	6.2E-07	21	20.80	320	398
RNA_helicase	RNA helicase	0.0029	10	21.50	320	342
NACHT	NACHT domain	3.6E-05	15	20.40	320	348
AAA_18	AAA domain	0.0002	14	29.40	320	390
MMR_HSR1	GTPase of unknown function	0.06	5	24.50	320	353
NTPase_1	NTPase	0.026	6	23.90	321	345
AAA_14	AAA domain	0.00068	11	27.00	321	401
AAA_25	AAA domain	6.5E-05	14	27.00	321	396
Zeta_toxin	Zeta toxin	0.076	4	20.10	321	341
AAA_33	AAA domain	0.015	7	27.00	321	341
TIP49	TIP49 C-terminus	0.005	8	23.80	321	351
ABC_tran	ABC transporter	0.16	4	23.10	321	348
AAA_3	ATPase family associated with various cellular activities (AAA)	0.13	4	21.10	322	341
CbiA	CobQ/CobB/MinD/ParA nucleotide binding domain	0.41	2	21.70	326	342
TniB	Bacterial TniB protein	4E-07	21	20.10	362	456
NADH-UOR_E	putative NADH-ubiquinone oxidoreductase chain E	0.0046	9	25.00	369	397
AAA_16	AAA ATPase domain	0.84	2	32.60	372	398
ResIII	Type III restriction enzyme, res subunit	0.26	3	20.90	378	404
VirE	Virulence-associated protein E	0.24	2	21.50	426	464
AAA_lid_9	AAA lid domain	3.1E-37	118	22.80	458	556
TniB	Bacterial TniB protein	0.48	1	20.10	460	530
T2SSE	Type II/IV secretion system protein	0.00016	12	24.90	512	702
Takusan	Takusan	0.00016	13	28.00	519	560
YlqD	YlqD protein	0.012	8	27.00	520	586
UVR	UvrB/uvrC motif	2.7E-09	28	20.50	532	566
Torsin	Torsin	0.00026	13	20.90	617	684
VirE	Virulence-associated protein E	0.003	9	21.50	619	687
DUF815	Protein of unknown function (DUF815)	0.0059	7	20.10	624	705
TIP49	TIP49 C-terminus	0.69	1	23.80	630	681
RuvB_N	Holliday junction DNA helicase ruvB N-terminus	0.0073	8	20.00	631	681
AAA_16	AAA ATPase domain	0.00013	14	32.60	631	684
Sigma54_activat	Sigma-54 interaction domain	4.9E-08	24	20.20	633	763
ResIII	Type III restriction enzyme, res subunit	0.0041	9	20.90	634	687
Zeta_toxin	Zeta toxin	0.00019	12	20.10	653	702
TsaE	Threonylcarbamoyl adenosine biosynthesis protein TsaE	0.033	6	26.60	654	682
DNA_pol3_delta2	DNA polymerase III, delta subunit	0.0021	10	27.00	656	688
AAA_2	AAA domain (Cdc48 subfamily)	0	185	20.60	657	831
Mg_chelatase	Magnesium chelatase, subunit ChlI	0.014	6	20.30	661	681
AAA_7	P-loop containing dynein motor region	0.018	6	25.80	661	708
RsgA_GTPase	RsgA GTPase	0.0038	9	30.00	662	681
AAA_28	AAA domain	0.0044	9	27.00	662	682
IstB_IS21	IstB-like ATP binding protein	0.0016	10	24.10	662	681
AAA_5	AAA domain (dynein-related subfamily)	8.2E-14	43	20.80	662	783
AAA_23	AAA domain	0.0027	10	27.00	662	791
AAA_29	P-loop containing region of AAA domain	0.02	6	27.00	662	681
NTPase_1	NTPase	0.25	3	23.90	663	680
CbiA	CobQ/CobB/MinD/ParA nucleotide binding domain	0.21	3	21.70	663	683
MMR_HSR1	GTPase of unknown function	0.16	4	24.50	663	680
AAA	ATPase family associated with various cellular activities (AAA)	3.2E-09	29	20.80	663	783
AAA_22	AAA domain	0.011	8	27.00	663	681
RNA_helicase	RNA helicase	0.0021	10	21.50	663	682
AAA_25	AAA domain	0.11	4	27.00	663	682
NACHT	NACHT domain	0.04	5	20.40	663	824
AAA_14	AAA domain	0.00086	11	27.00	663	758
AAA_33	AAA domain	0.0079	8	27.00	663	703
Roc	Ras of Complex, Roc, domain of DAPkinase	0.17	4	27.00	664	695
ABC_tran	ABC transporter	0.005	9	23.10	664	698
AAA_18	AAA domain	0.0015	11	29.40	664	681
AAA_24	AAA domain	0.024	6	27.00	665	753
AAA_22	AAA domain	1	1	27.00	722	757
DNA_pol3_delta2	DNA polymerase III, delta subunit	0.9	1	27.00	731	757
AAA_3	ATPase family associated with various cellular activities (AAA)	0.0032	9	21.10	733	779
YlqD	YlqD protein	0.32	3	27.00	809	874
TIP49	TIP49 C-terminus	0.051	4	23.80	834	932
ClpB_D2-small	C-terminal, D2-small domain, of ClpB protein	1.5E-25	81	21.40	838	918
MazE_antitoxin	Antidote-toxin recognition MazE, bacterial antitoxin	0.0031	9	24.70	901	928