c2pfam

AT3G49170.1 :

Domain Description Evalue Bits GA Start End
TPR_14 Tetratricopeptide repeat 0.51 1 23.50 30 50
PPR_2 PPR repeat family 4.1E-06 17 30.00 32 73
PPR_3 Pentatricopeptide repeat domain 0.00042 10 25.00 36 72
PPR PPR repeat 0.08 3 25.00 37 57
PPR_long Pentacotripeptide-repeat region of PRORP 4.3E-05 13 27.00 47 126
PPR_1 PPR repeat 0.25 1 23.80 61 71
PPR PPR repeat 0.02 5 25.00 63 90
PPR_1 PPR repeat 6E-09 25 23.80 92 124
PPR_3 Pentatricopeptide repeat domain 5.9E-08 23 25.00 92 144
PPR_2 PPR repeat family 6.6E-09 26 30.00 95 126
TPR_17 Tetratricopeptide repeat 0.32 2 24.40 96 117
Clathrin Region in Clathrin and VPS 0.097 2 23.60 96 122
PPR PPR repeat 8.4E-10 28 25.00 98 127
TPR_14 Tetratricopeptide repeat 0.057 4 23.50 103 136
TPR_2 Tetratricopeptide repeat 0.69 0 22.40 106 122
PPR_1 PPR repeat 0.0032 7 23.80 128 156
PPR_2 PPR repeat family 3.7E-11 33 30.00 129 177
PPR_3 Pentatricopeptide repeat domain 0.00029 11 25.00 129 178
PPR PPR repeat 3.7E-07 20 25.00 132 162
PPR_long Pentacotripeptide-repeat region of PRORP 0.044 3 27.00 150 179
PPR_1 PPR repeat 0.032 4 23.80 161 175
PPR PPR repeat 0.17 2 25.00 168 180
PPR_2 PPR repeat family 0.00027 11 30.00 207 233
Coatomer_E Coatomer epsilon subunit 0.007 5 20.40 208 274
PPR PPR repeat 0.032 5 25.00 218 233
PPR_1 PPR repeat 0.032 4 23.80 219 230
PPR_1 PPR repeat 0.0051 6 23.80 231 260
PPR_3 Pentatricopeptide repeat domain 0.047 4 25.00 231 259
PPR_2 PPR repeat family 7.9E-12 35 30.00 233 280
PPR PPR repeat 8.4E-08 22 25.00 235 265
PPR_long Pentacotripeptide-repeat region of PRORP 0.69 -1 27.00 251 281
PPR_long Pentacotripeptide-repeat region of PRORP 0.31 0 27.00 313 332
PPR PPR repeat 0.0045 7 25.00 315 334
PPR_2 PPR repeat family 0.1 3 30.00 316 336
PPR_1 PPR repeat 0.12 2 23.80 318 332
PPR_long Pentacotripeptide-repeat region of PRORP 0.013 5 27.00 319 383
PPR_2 PPR repeat family 2.5E-12 37 30.00 335 383
PPR_3 Pentatricopeptide repeat domain 3.2E-06 17 25.00 335 385
PPR_1 PPR repeat 0.026 4 23.80 336 363
PPR PPR repeat 8.3E-05 13 25.00 338 367
PPR_long Pentacotripeptide-repeat region of PRORP 4.5E-05 13 27.00 353 489
PPR_1 PPR repeat 0.3 1 23.80 369 378
Clathrin Region in Clathrin and VPS 0.089 2 23.60 393 435
PPR_2 PPR repeat family 0.00028 11 30.00 407 438
Coatomer_E Coatomer epsilon subunit 0.011 5 20.40 410 441
PPR_1 PPR repeat 0.2 1 23.80 412 432
PPR PPR repeat 0.00018 12 25.00 412 438
PPR_2 PPR repeat family 5.2E-12 36 30.00 437 485
PPR_3 Pentatricopeptide repeat domain 0.0088 6 25.00 438 482
PPR_1 PPR repeat 1.6E-07 21 23.80 438 464
PPR PPR repeat 2E-06 18 25.00 440 468
PPR_long Pentacotripeptide-repeat region of PRORP 3.4E-05 13 27.00 451 537
PPR_3 Pentatricopeptide repeat domain 7.1E-05 13 25.00 460 520
PPR PPR repeat 0.18 2 25.00 475 504
PPR_3 Pentatricopeptide repeat domain 0.0012 9 25.00 497 537
Clathrin Region in Clathrin and VPS 0.22 1 23.60 504 537
PPR_2 PPR repeat family 8.5E-07 19 30.00 511 540
PPR PPR repeat 6.2E-07 19 25.00 512 540
PPR_1 PPR repeat 2.8E-05 14 23.80 513 536
PPR_1 PPR repeat 0.0028 7 23.80 538 554
PPR_2 PPR repeat family 2E-12 37 30.00 538 586
PPR_3 Pentatricopeptide repeat domain 4E-10 29 25.00 539 585
PPR PPR repeat 1.6E-09 27 25.00 541 571
PPR_long Pentacotripeptide-repeat region of PRORP 6E-08 22 27.00 555 636
PPR_1 PPR repeat 0.0018 8 23.80 570 601
PPR PPR repeat 0.00029 11 25.00 576 603
PPR_2 PPR repeat family 0.00013 12 30.00 576 608
PPR_1 PPR repeat 1.7E-07 21 23.80 608 637
PPR PPR repeat 0.00024 11 25.00 614 637
PPR_2 PPR repeat family 0.0013 9 30.00 614 638
TPR_14 Tetratricopeptide repeat 0.063 4 23.50 665 684
TPR_17 Tetratricopeptide repeat 0.00024 11 24.40 667 695
Clathrin Region in Clathrin and VPS 1 -1 23.60 668 699
TPR_2 Tetratricopeptide repeat 0.017 5 22.40 678 696
PPR PPR repeat 0.00011 12 25.00 684 707
PPR_1 PPR repeat 0.27 1 23.80 687 704
PPR_2 PPR repeat family 0.3 1 30.00 687 708
DYW_deaminase DYW family of nucleic acid deaminases 0 141 31.60 713 840
ABC_trans_N ABC-transporter N-terminal 0.00023 12 25.40 803 823

850

TPR_14
PPR_2
PPR_3
PPR
PPR_long
PPR_1
PPR
PPR_1
PPR_3
PPR_2
TPR_17
Clathrin
PPR
TPR_14
TPR_2
PPR_1
PPR_2
PPR_3
PPR
PPR_long
PPR_1
PPR
PPR_2
Coatomer_E
PPR
PPR_1
PPR_1
PPR_3
PPR_2
PPR
PPR_long
PPR_long
PPR
PPR_2
PPR_1
PPR_long
PPR_2
PPR_3
PPR_1
PPR
PPR_long
PPR_1
Clathrin
PPR_2
Coatomer_E
PPR_1
PPR
PPR_2
PPR_3
PPR_1
PPR
PPR_long
PPR_3
PPR
PPR_3
Clathrin
PPR_2
PPR
PPR_1
PPR_1
PPR_2
PPR_3
PPR
PPR_long
PPR_1
PPR
PPR_2
PPR_1
PPR
PPR_2
TPR_14
TPR_17
Clathrin
TPR_2
PPR
PPR_1
PPR_2
DYW_deaminase
ABC_trans_N

References:

Coatomer_E
10469566 Segregation of COPI-rich and anterograde-cargo-rich domains in endoplasmic-reticulum-to-Golgi transport complexes. Curr Biol 1999;9:821-824.

Clathrin
1547490 Folding and trimerization of clathrin subunits at the triskelion hub. Cell 1992;68:899-910.
3480512 Clathrin heavy chain: molecular cloning and complete primary structure. Proc Natl Acad Sci U S A 1987;84:8805-8809.

ABC_trans_N

DYW_deaminase

TPR_17

TPR_2
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

TPR_14

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
TPR_14	Tetratricopeptide repeat	0.51	1	23.50	30	50
PPR_2	PPR repeat family	4.1E-06	17	30.00	32	73
PPR_3	Pentatricopeptide repeat domain	0.00042	10	25.00	36	72
PPR	PPR repeat	0.08	3	25.00	37	57
PPR_long	Pentacotripeptide-repeat region of PRORP	4.3E-05	13	27.00	47	126
PPR_1	PPR repeat	0.25	1	23.80	61	71
PPR	PPR repeat	0.02	5	25.00	63	90
PPR_1	PPR repeat	6E-09	25	23.80	92	124
PPR_3	Pentatricopeptide repeat domain	5.9E-08	23	25.00	92	144
PPR_2	PPR repeat family	6.6E-09	26	30.00	95	126
TPR_17	Tetratricopeptide repeat	0.32	2	24.40	96	117
Clathrin	Region in Clathrin and VPS	0.097	2	23.60	96	122
PPR	PPR repeat	8.4E-10	28	25.00	98	127
TPR_14	Tetratricopeptide repeat	0.057	4	23.50	103	136
TPR_2	Tetratricopeptide repeat	0.69	0	22.40	106	122
PPR_1	PPR repeat	0.0032	7	23.80	128	156
PPR_2	PPR repeat family	3.7E-11	33	30.00	129	177
PPR_3	Pentatricopeptide repeat domain	0.00029	11	25.00	129	178
PPR	PPR repeat	3.7E-07	20	25.00	132	162
PPR_long	Pentacotripeptide-repeat region of PRORP	0.044	3	27.00	150	179
PPR_1	PPR repeat	0.032	4	23.80	161	175
PPR	PPR repeat	0.17	2	25.00	168	180
PPR_2	PPR repeat family	0.00027	11	30.00	207	233
Coatomer_E	Coatomer epsilon subunit	0.007	5	20.40	208	274
PPR	PPR repeat	0.032	5	25.00	218	233
PPR_1	PPR repeat	0.032	4	23.80	219	230
PPR_1	PPR repeat	0.0051	6	23.80	231	260
PPR_3	Pentatricopeptide repeat domain	0.047	4	25.00	231	259
PPR_2	PPR repeat family	7.9E-12	35	30.00	233	280
PPR	PPR repeat	8.4E-08	22	25.00	235	265
PPR_long	Pentacotripeptide-repeat region of PRORP	0.69	-1	27.00	251	281
PPR_long	Pentacotripeptide-repeat region of PRORP	0.31	0	27.00	313	332
PPR	PPR repeat	0.0045	7	25.00	315	334
PPR_2	PPR repeat family	0.1	3	30.00	316	336
PPR_1	PPR repeat	0.12	2	23.80	318	332
PPR_long	Pentacotripeptide-repeat region of PRORP	0.013	5	27.00	319	383
PPR_2	PPR repeat family	2.5E-12	37	30.00	335	383
PPR_3	Pentatricopeptide repeat domain	3.2E-06	17	25.00	335	385
PPR_1	PPR repeat	0.026	4	23.80	336	363
PPR	PPR repeat	8.3E-05	13	25.00	338	367
PPR_long	Pentacotripeptide-repeat region of PRORP	4.5E-05	13	27.00	353	489
PPR_1	PPR repeat	0.3	1	23.80	369	378
Clathrin	Region in Clathrin and VPS	0.089	2	23.60	393	435
PPR_2	PPR repeat family	0.00028	11	30.00	407	438
Coatomer_E	Coatomer epsilon subunit	0.011	5	20.40	410	441
PPR_1	PPR repeat	0.2	1	23.80	412	432
PPR	PPR repeat	0.00018	12	25.00	412	438
PPR_2	PPR repeat family	5.2E-12	36	30.00	437	485
PPR_3	Pentatricopeptide repeat domain	0.0088	6	25.00	438	482
PPR_1	PPR repeat	1.6E-07	21	23.80	438	464
PPR	PPR repeat	2E-06	18	25.00	440	468
PPR_long	Pentacotripeptide-repeat region of PRORP	3.4E-05	13	27.00	451	537
PPR_3	Pentatricopeptide repeat domain	7.1E-05	13	25.00	460	520
PPR	PPR repeat	0.18	2	25.00	475	504
PPR_3	Pentatricopeptide repeat domain	0.0012	9	25.00	497	537
Clathrin	Region in Clathrin and VPS	0.22	1	23.60	504	537
PPR_2	PPR repeat family	8.5E-07	19	30.00	511	540
PPR	PPR repeat	6.2E-07	19	25.00	512	540
PPR_1	PPR repeat	2.8E-05	14	23.80	513	536
PPR_1	PPR repeat	0.0028	7	23.80	538	554
PPR_2	PPR repeat family	2E-12	37	30.00	538	586
PPR_3	Pentatricopeptide repeat domain	4E-10	29	25.00	539	585
PPR	PPR repeat	1.6E-09	27	25.00	541	571
PPR_long	Pentacotripeptide-repeat region of PRORP	6E-08	22	27.00	555	636
PPR_1	PPR repeat	0.0018	8	23.80	570	601
PPR	PPR repeat	0.00029	11	25.00	576	603
PPR_2	PPR repeat family	0.00013	12	30.00	576	608
PPR_1	PPR repeat	1.7E-07	21	23.80	608	637
PPR	PPR repeat	0.00024	11	25.00	614	637
PPR_2	PPR repeat family	0.0013	9	30.00	614	638
TPR_14	Tetratricopeptide repeat	0.063	4	23.50	665	684
TPR_17	Tetratricopeptide repeat	0.00024	11	24.40	667	695
Clathrin	Region in Clathrin and VPS	1	-1	23.60	668	699
TPR_2	Tetratricopeptide repeat	0.017	5	22.40	678	696
PPR	PPR repeat	0.00011	12	25.00	684	707
PPR_1	PPR repeat	0.27	1	23.80	687	704
PPR_2	PPR repeat family	0.3	1	30.00	687	708
DYW_deaminase	DYW family of nucleic acid deaminases	0	141	31.60	713	840
ABC_trans_N	ABC-transporter N-terminal	0.00023	12	25.40	803	823