c2pfam

AT3G49710.1 :

Domain Description Evalue Bits GA Start End
PPR PPR repeat 0.12 2 25.00 47 66
PPR_1 PPR repeat 1.8E-07 20 23.80 71 99
PPR_3 Pentatricopeptide repeat domain 0.002 7 25.00 71 85
PPR_2 PPR repeat family 4.6E-07 19 30.00 72 99
PPR PPR repeat 1.4E-05 15 25.00 75 100
PPR_long Pentacotripeptide-repeat region of PRORP 0.15 0 27.00 79 150
PPR_3 Pentatricopeptide repeat domain 1.4E-06 18 25.00 102 137
PPR_1 PPR repeat 2.3E-09 26 23.80 102 132
PPR_2 PPR repeat family 1.8E-14 43 30.00 103 151
PPR PPR repeat 1E-09 28 25.00 106 136
PPR_1 PPR repeat 0.38 0 23.80 135 151
PPR PPR repeat 0.00037 10 25.00 177 201
PPR_2 PPR repeat family 0.035 4 30.00 177 199
PPR_1 PPR repeat 0.38 0 23.80 185 196
PPR_1 PPR repeat 0.0075 5 23.80 204 231
PPR_2 PPR repeat family 9.5E-12 34 30.00 204 250
PPR PPR repeat 8.8E-10 28 25.00 206 236
PPR_long Pentacotripeptide-repeat region of PRORP 0.031 3 27.00 217 252
PPR_3 Pentatricopeptide repeat domain 0.53 0 25.00 227 249
PPR_1 PPR repeat 4.5E-06 16 23.80 305 336
PPR_3 Pentatricopeptide repeat domain 0.022 4 25.00 306 355
PPR_2 PPR repeat family 4.1E-13 39 30.00 307 355
PPR PPR repeat 3E-06 17 25.00 310 340
PPR_long Pentacotripeptide-repeat region of PRORP 0.03 3 27.00 322 408
PPR PPR repeat 2E-07 20 25.00 385 410
PPR_2 PPR repeat family 0.00012 12 30.00 385 409
PPR_3 Pentatricopeptide repeat domain 0.0002 11 25.00 385 420
PPR_1 PPR repeat 0.0043 6 23.80 385 407
TPR_14 Tetratricopeptide repeat 0.092 3 23.50 386 408
TPR_19 Tetratricopeptide repeat 0.0095 6 25.00 386 411
PPR_3 Pentatricopeptide repeat domain 1.3E-07 21 25.00 409 457
PPR_1 PPR repeat 1.2E-05 14 23.80 410 438
PPR_2 PPR repeat family 8.9E-15 44 30.00 411 458
PPR PPR repeat 1.1E-10 31 25.00 413 443
TPR_14 Tetratricopeptide repeat 0.98 0 23.50 418 440
PPR_long Pentacotripeptide-repeat region of PRORP 4.1E-06 15 27.00 422 509
PPR_3 Pentatricopeptide repeat domain 2.2E-07 20 25.00 435 494
PPR_1 PPR repeat 0.00013 11 23.80 442 474
PPR PPR repeat 1.7E-06 17 25.00 448 475
PPR_2 PPR repeat family 2.4E-05 14 30.00 449 491
PPR_1 PPR repeat 9.8E-08 21 23.80 479 509
PPR_3 Pentatricopeptide repeat domain 0.2 1 25.00 479 525
PPR PPR repeat 3.2E-07 20 25.00 485 509
PPR_2 PPR repeat family 0.00028 10 30.00 486 509
TPR_14 Tetratricopeptide repeat 0.67 1 23.50 487 507
TPR_19 Tetratricopeptide repeat 0.043 4 25.00 491 524
PPR_2 PPR repeat family 0.16 2 30.00 513 539
PPR PPR repeat 0.42 1 25.00 516 535
PPR_3 Pentatricopeptide repeat domain 0.54 0 25.00 516 536
TPR_14 Tetratricopeptide repeat 0.073 4 23.50 517 556
PPR_3 Pentatricopeptide repeat domain 1 -1 25.00 552 581
PPR PPR repeat 0.0047 7 25.00 552 579
DYW_deaminase DYW family of nucleic acid deaminases 0 122 31.60 584 711
PPR PPR repeat 0.7 0 25.00 610 621

721

PPR
PPR_1
PPR_3
PPR_2
PPR
PPR_long
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR_2
PPR_1
PPR_1
PPR_2
PPR
PPR_long
PPR_3
PPR_1
PPR_3
PPR_2
PPR
PPR_long
PPR
PPR_2
PPR_3
PPR_1
TPR_14
TPR_19
PPR_3
PPR_1
PPR_2
PPR
TPR_14
PPR_long
PPR_3
PPR_1
PPR
PPR_2
PPR_1
PPR_3
PPR
PPR_2
TPR_14
TPR_19
PPR_2
PPR
PPR_3
TPR_14
PPR_3
PPR
DYW_deaminase
PPR

References:

TPR_19

DYW_deaminase

TPR_14

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
PPR	PPR repeat	0.12	2	25.00	47	66
PPR_1	PPR repeat	1.8E-07	20	23.80	71	99
PPR_3	Pentatricopeptide repeat domain	0.002	7	25.00	71	85
PPR_2	PPR repeat family	4.6E-07	19	30.00	72	99
PPR	PPR repeat	1.4E-05	15	25.00	75	100
PPR_long	Pentacotripeptide-repeat region of PRORP	0.15	0	27.00	79	150
PPR_3	Pentatricopeptide repeat domain	1.4E-06	18	25.00	102	137
PPR_1	PPR repeat	2.3E-09	26	23.80	102	132
PPR_2	PPR repeat family	1.8E-14	43	30.00	103	151
PPR	PPR repeat	1E-09	28	25.00	106	136
PPR_1	PPR repeat	0.38	0	23.80	135	151
PPR	PPR repeat	0.00037	10	25.00	177	201
PPR_2	PPR repeat family	0.035	4	30.00	177	199
PPR_1	PPR repeat	0.38	0	23.80	185	196
PPR_1	PPR repeat	0.0075	5	23.80	204	231
PPR_2	PPR repeat family	9.5E-12	34	30.00	204	250
PPR	PPR repeat	8.8E-10	28	25.00	206	236
PPR_long	Pentacotripeptide-repeat region of PRORP	0.031	3	27.00	217	252
PPR_3	Pentatricopeptide repeat domain	0.53	0	25.00	227	249
PPR_1	PPR repeat	4.5E-06	16	23.80	305	336
PPR_3	Pentatricopeptide repeat domain	0.022	4	25.00	306	355
PPR_2	PPR repeat family	4.1E-13	39	30.00	307	355
PPR	PPR repeat	3E-06	17	25.00	310	340
PPR_long	Pentacotripeptide-repeat region of PRORP	0.03	3	27.00	322	408
PPR	PPR repeat	2E-07	20	25.00	385	410
PPR_2	PPR repeat family	0.00012	12	30.00	385	409
PPR_3	Pentatricopeptide repeat domain	0.0002	11	25.00	385	420
PPR_1	PPR repeat	0.0043	6	23.80	385	407
TPR_14	Tetratricopeptide repeat	0.092	3	23.50	386	408
TPR_19	Tetratricopeptide repeat	0.0095	6	25.00	386	411
PPR_3	Pentatricopeptide repeat domain	1.3E-07	21	25.00	409	457
PPR_1	PPR repeat	1.2E-05	14	23.80	410	438
PPR_2	PPR repeat family	8.9E-15	44	30.00	411	458
PPR	PPR repeat	1.1E-10	31	25.00	413	443
TPR_14	Tetratricopeptide repeat	0.98	0	23.50	418	440
PPR_long	Pentacotripeptide-repeat region of PRORP	4.1E-06	15	27.00	422	509
PPR_3	Pentatricopeptide repeat domain	2.2E-07	20	25.00	435	494
PPR_1	PPR repeat	0.00013	11	23.80	442	474
PPR	PPR repeat	1.7E-06	17	25.00	448	475
PPR_2	PPR repeat family	2.4E-05	14	30.00	449	491
PPR_1	PPR repeat	9.8E-08	21	23.80	479	509
PPR_3	Pentatricopeptide repeat domain	0.2	1	25.00	479	525
PPR	PPR repeat	3.2E-07	20	25.00	485	509
PPR_2	PPR repeat family	0.00028	10	30.00	486	509
TPR_14	Tetratricopeptide repeat	0.67	1	23.50	487	507
TPR_19	Tetratricopeptide repeat	0.043	4	25.00	491	524
PPR_2	PPR repeat family	0.16	2	30.00	513	539
PPR	PPR repeat	0.42	1	25.00	516	535
PPR_3	Pentatricopeptide repeat domain	0.54	0	25.00	516	536
TPR_14	Tetratricopeptide repeat	0.073	4	23.50	517	556
PPR_3	Pentatricopeptide repeat domain	1	-1	25.00	552	581
PPR	PPR repeat	0.0047	7	25.00	552	579
DYW_deaminase	DYW family of nucleic acid deaminases	0	122	31.60	584	711
PPR	PPR repeat	0.7	0	25.00	610	621