c2pfam

AT3G49730.1 :

Domain Description Evalue Bits GA Start End
PPR PPR repeat 0.015 6 25.00 134 159
PPR_long Pentacotripeptide-repeat region of PRORP 8.3E-07 18 27.00 134 229
PPR_2 PPR repeat family 0.081 3 30.00 136 161
TPR_19 Tetratricopeptide repeat 0.046 4 25.00 153 196
PPR PPR repeat 8.4E-06 16 25.00 170 198
PPR_2 PPR repeat family 6.7E-12 35 30.00 173 214
MRP-S27 Mitochondrial 28S ribosomal protein S27 2.2E-07 20 25.90 173 228
Exog_C Endo/exonuclease (EXOG) C-terminal domain 1.6E-05 15 29.50 174 205
PPR_1 PPR repeat 0.00025 11 23.80 177 193
PPR_long Pentacotripeptide-repeat region of PRORP 2E-10 30 27.00 182 294
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.015 4 21.90 187 233
PPR_3 Pentatricopeptide repeat domain 2.7E-09 27 25.00 189 243
PPR_1 PPR repeat 3.8E-13 39 23.80 197 229
PPR PPR repeat 6.8E-09 26 25.00 204 231
PPR_2 PPR repeat family 9.2E-08 22 30.00 205 231
TPR_14 Tetratricopeptide repeat 0.023 6 23.50 207 237
TPR_19 Tetratricopeptide repeat 0.028 5 25.00 208 238
DUF3368 Domain of unknown function (DUF3368) 0.44 0 27.30 208 230
Coatomer_E Coatomer epsilon subunit 0.0093 5 20.40 216 260
PPR_1 PPR repeat 1.1E-09 28 23.80 233 263
PPR_3 Pentatricopeptide repeat domain 8E-09 25 25.00 234 281
PPR_2 PPR repeat family 2.1E-08 24 30.00 235 275
PPR PPR repeat 1.9E-07 21 25.00 239 267
DUF3368 Domain of unknown function (DUF3368) 0.07 3 27.30 248 266
Exog_C Endo/exonuclease (EXOG) C-terminal domain 0.013 5 29.50 257 270
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.37 0 21.90 258 278
PPR_3 Pentatricopeptide repeat domain 1.8E-13 40 25.00 258 316
PPR_1 PPR repeat 2.4E-09 27 23.80 266 298
PPR_2 PPR repeat family 5.5E-20 61 30.00 269 318
PPR PPR repeat 6.1E-09 26 25.00 272 302
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.65 -2 25.90 277 325
SPOB_a Sensor_kinase_SpoOB-type, alpha-helical domain 0.082 3 28.10 277 299
Coatomer_E Coatomer epsilon subunit 0.015 4 20.40 283 419
PPR_long Pentacotripeptide-repeat region of PRORP 2E-12 37 27.00 286 380
PPR_3 Pentatricopeptide repeat domain 1.3E-13 41 25.00 293 351
PPR_1 PPR repeat 1.5E-10 31 23.80 300 334
PPR_2 PPR repeat family 2E-17 53 30.00 306 354
PPR PPR repeat 1.1E-06 19 25.00 308 338
TPR_14 Tetratricopeptide repeat 0.64 1 23.50 312 333
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.012 5 21.90 328 357
PPR_3 Pentatricopeptide repeat domain 1.8E-12 37 25.00 328 385
PPR_1 PPR repeat 2.4E-13 40 23.80 337 369
PPR_2 PPR repeat family 6.8E-15 45 30.00 341 381
PPR PPR repeat 3.3E-12 36 25.00 343 373
SPOB_a Sensor_kinase_SpoOB-type, alpha-helical domain 0.089 3 28.10 348 371
PPR_long Pentacotripeptide-repeat region of PRORP 3.7E-11 33 27.00 358 446
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.041 3 21.90 363 381
PPR_1 PPR repeat 0.24 1 23.80 371 380
PPR_2 PPR repeat family 2.6E-09 27 30.00 375 411
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.0078 5 25.90 375 487
PPR PPR repeat 4.5E-07 20 25.00 378 408
PPR_long Pentacotripeptide-repeat region of PRORP 2.4E-07 20 27.00 388 468
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.045 3 21.90 390 422
DUF3368 Domain of unknown function (DUF3368) 0.37 1 27.30 398 421
PPR_3 Pentatricopeptide repeat domain 4E-10 30 25.00 399 455
PPR_1 PPR repeat 9.4E-12 34 23.80 406 439
PPR_2 PPR repeat family 5.4E-16 49 30.00 410 457
PPR PPR repeat 3.3E-09 27 25.00 414 443
TPR_19 Tetratricopeptide repeat 0.8 0 25.00 418 434
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.051 2 21.90 431 469
PPR_1 PPR repeat 6.5E-06 16 23.80 441 474
PPR PPR repeat 1.1E-07 22 25.00 449 478
PPR_2 PPR repeat family 0.059 4 30.00 465 478
PPR_long Pentacotripeptide-repeat region of PRORP 0.0032 7 27.00 465 586
PPR PPR repeat 0.05 4 25.00 488 508
PPR_2 PPR repeat family 0.34 1 30.00 489 508
PPR_1 PPR repeat 0.12 2 23.80 516 541
PPR_3 Pentatricopeptide repeat domain 0.43 1 25.00 518 564
PPR_2 PPR repeat family 3.2E-08 24 30.00 520 567
PPR PPR repeat 0.00012 12 25.00 523 551
PPR_3 Pentatricopeptide repeat domain 0.036 4 25.00 546 583
SPOB_a Sensor_kinase_SpoOB-type, alpha-helical domain 0.15 2 28.10 563 595

638

PPR
PPR_long
PPR_2
TPR_19
PPR
PPR_2
MRP-S27
Exog_C
PPR_1
PPR_long
ECSIT
PPR_3
PPR_1
PPR
PPR_2
TPR_14
TPR_19
DUF3368
Coatomer_E
PPR_1
PPR_3
PPR_2
PPR
DUF3368
Exog_C
ECSIT
PPR_3
PPR_1
PPR_2
PPR
MRP-S27
SPOB_a
Coatomer_E
PPR_long
PPR_3
PPR_1
PPR_2
PPR
TPR_14
ECSIT
PPR_3
PPR_1
PPR_2
PPR
SPOB_a
PPR_long
ECSIT
PPR_1
PPR_2
MRP-S27
PPR
PPR_long
ECSIT
DUF3368
PPR_3
PPR_1
PPR_2
PPR
TPR_19
ECSIT
PPR_1
PPR
PPR_2
PPR_long
PPR
PPR_2
PPR_1
PPR_3
PPR_2
PPR
PPR_3
SPOB_a

References:

Exog_C

TPR_14

ECSIT
10465784 ECSIT is an evolutionarily conserved intermediate in the Toll/IL-1 signal transduction pathway. Genes Dev 1999;13:2059-2071.

TPR_19

MRP-S27
11344316 Identification of four proteins from the small subunit of the mammalian mitochondrial ribosome using a proteomics approach. Protein Sci. 2001;10:471-481.

PPR_long

PPR_3

PPR_2

PPR_1

Coatomer_E
10469566 Segregation of COPI-rich and anterograde-cargo-rich domains in endoplasmic-reticulum-to-Golgi transport complexes. Curr Biol 1999;9:821-824.

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

SPOB_a

DUF3368

Domain	Description	Evalue	Bits	GA	Start	End
PPR	PPR repeat	0.015	6	25.00	134	159
PPR_long	Pentacotripeptide-repeat region of PRORP	8.3E-07	18	27.00	134	229
PPR_2	PPR repeat family	0.081	3	30.00	136	161
TPR_19	Tetratricopeptide repeat	0.046	4	25.00	153	196
PPR	PPR repeat	8.4E-06	16	25.00	170	198
PPR_2	PPR repeat family	6.7E-12	35	30.00	173	214
MRP-S27	Mitochondrial 28S ribosomal protein S27	2.2E-07	20	25.90	173	228
Exog_C	Endo/exonuclease (EXOG) C-terminal domain	1.6E-05	15	29.50	174	205
PPR_1	PPR repeat	0.00025	11	23.80	177	193
PPR_long	Pentacotripeptide-repeat region of PRORP	2E-10	30	27.00	182	294
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.015	4	21.90	187	233
PPR_3	Pentatricopeptide repeat domain	2.7E-09	27	25.00	189	243
PPR_1	PPR repeat	3.8E-13	39	23.80	197	229
PPR	PPR repeat	6.8E-09	26	25.00	204	231
PPR_2	PPR repeat family	9.2E-08	22	30.00	205	231
TPR_14	Tetratricopeptide repeat	0.023	6	23.50	207	237
TPR_19	Tetratricopeptide repeat	0.028	5	25.00	208	238
DUF3368	Domain of unknown function (DUF3368)	0.44	0	27.30	208	230
Coatomer_E	Coatomer epsilon subunit	0.0093	5	20.40	216	260
PPR_1	PPR repeat	1.1E-09	28	23.80	233	263
PPR_3	Pentatricopeptide repeat domain	8E-09	25	25.00	234	281
PPR_2	PPR repeat family	2.1E-08	24	30.00	235	275
PPR	PPR repeat	1.9E-07	21	25.00	239	267
DUF3368	Domain of unknown function (DUF3368)	0.07	3	27.30	248	266
Exog_C	Endo/exonuclease (EXOG) C-terminal domain	0.013	5	29.50	257	270
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.37	0	21.90	258	278
PPR_3	Pentatricopeptide repeat domain	1.8E-13	40	25.00	258	316
PPR_1	PPR repeat	2.4E-09	27	23.80	266	298
PPR_2	PPR repeat family	5.5E-20	61	30.00	269	318
PPR	PPR repeat	6.1E-09	26	25.00	272	302
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.65	-2	25.90	277	325
SPOB_a	Sensor_kinase_SpoOB-type, alpha-helical domain	0.082	3	28.10	277	299
Coatomer_E	Coatomer epsilon subunit	0.015	4	20.40	283	419
PPR_long	Pentacotripeptide-repeat region of PRORP	2E-12	37	27.00	286	380
PPR_3	Pentatricopeptide repeat domain	1.3E-13	41	25.00	293	351
PPR_1	PPR repeat	1.5E-10	31	23.80	300	334
PPR_2	PPR repeat family	2E-17	53	30.00	306	354
PPR	PPR repeat	1.1E-06	19	25.00	308	338
TPR_14	Tetratricopeptide repeat	0.64	1	23.50	312	333
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.012	5	21.90	328	357
PPR_3	Pentatricopeptide repeat domain	1.8E-12	37	25.00	328	385
PPR_1	PPR repeat	2.4E-13	40	23.80	337	369
PPR_2	PPR repeat family	6.8E-15	45	30.00	341	381
PPR	PPR repeat	3.3E-12	36	25.00	343	373
SPOB_a	Sensor_kinase_SpoOB-type, alpha-helical domain	0.089	3	28.10	348	371
PPR_long	Pentacotripeptide-repeat region of PRORP	3.7E-11	33	27.00	358	446
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.041	3	21.90	363	381
PPR_1	PPR repeat	0.24	1	23.80	371	380
PPR_2	PPR repeat family	2.6E-09	27	30.00	375	411
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.0078	5	25.90	375	487
PPR	PPR repeat	4.5E-07	20	25.00	378	408
PPR_long	Pentacotripeptide-repeat region of PRORP	2.4E-07	20	27.00	388	468
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.045	3	21.90	390	422
DUF3368	Domain of unknown function (DUF3368)	0.37	1	27.30	398	421
PPR_3	Pentatricopeptide repeat domain	4E-10	30	25.00	399	455
PPR_1	PPR repeat	9.4E-12	34	23.80	406	439
PPR_2	PPR repeat family	5.4E-16	49	30.00	410	457
PPR	PPR repeat	3.3E-09	27	25.00	414	443
TPR_19	Tetratricopeptide repeat	0.8	0	25.00	418	434
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.051	2	21.90	431	469
PPR_1	PPR repeat	6.5E-06	16	23.80	441	474
PPR	PPR repeat	1.1E-07	22	25.00	449	478
PPR_2	PPR repeat family	0.059	4	30.00	465	478
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0032	7	27.00	465	586
PPR	PPR repeat	0.05	4	25.00	488	508
PPR_2	PPR repeat family	0.34	1	30.00	489	508
PPR_1	PPR repeat	0.12	2	23.80	516	541
PPR_3	Pentatricopeptide repeat domain	0.43	1	25.00	518	564
PPR_2	PPR repeat family	3.2E-08	24	30.00	520	567
PPR	PPR repeat	0.00012	12	25.00	523	551
PPR_3	Pentatricopeptide repeat domain	0.036	4	25.00	546	583
SPOB_a	Sensor_kinase_SpoOB-type, alpha-helical domain	0.15	2	28.10	563	595