c2pfam

AT3G50360.1 :

Domain Description Evalue Bits GA Start End
Glyco_hydro_56 Hyaluronidase 0.82 -1 18.70 3 33
SRI SRI (Set2 Rpb1 interacting) domain 0.93 0 20.90 10 30
SPARC_Ca_bdg Secreted protein acidic and rich in cysteine Ca binding region 4.6E-05 14 21.40 10 86
EF-hand_8 EF-hand domain pair 2.8E-06 17 28.00 12 52
EF-hand_11 EF-hand domain 4.1E-05 15 21.70 20 89
tRNA_synt_1c_R1 Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 0.0008 10 25.00 24 71
EF-hand_4 Cytoskeletal-regulatory complex EF hand 6.1E-05 13 21.30 24 66
EF-hand_7 EF-hand domain pair 2.7E-19 60 30.00 26 88
Caleosin Caleosin related protein 0.00088 10 20.60 27 60
EF-hand_1 EF hand 1.2E-11 34 25.40 27 55
EF-hand_6 EF-hand domain 2.6E-10 30 25.00 27 56
EF-hand_5 EF hand 9.1E-09 25 25.90 28 49
EF-hand_9 EF-hand domain 4.8E-09 27 37.00 31 92
SurA_N_3 SurA N-terminal domain 0.00084 9 27.20 32 88
Dockerin_1 Dockerin type I repeat 0.00058 10 20.50 35 76
TerB Tellurite resistance protein TerB 0.00018 12 22.80 41 101
SurA_N_2 SurA N-terminal domain 0.0015 9 28.50 42 72
UPF0154 Uncharacterised protein family (UPF0154) 0.024 5 20.90 43 71
EF-hand_8 EF-hand domain pair 1E-09 29 28.00 43 89
Glyco_hydro_56 Hyaluronidase 0.00037 10 18.70 58 141
Caleosin Caleosin related protein 0.0063 7 20.60 60 123
EF-hand_4 Cytoskeletal-regulatory complex EF hand 0.00017 12 21.30 60 89
EF-hand_5 EF hand 4.4E-07 20 25.90 64 87
EF-hand_1 EF hand 1.5E-11 34 25.40 64 90
EF-hand_6 EF-hand domain 2.7E-06 17 25.00 71 89
SurA_N_3 SurA N-terminal domain 0.00027 11 27.20 88 164
EF-hand_8 EF-hand domain pair 1.2E-05 15 28.00 92 127
SPARC_Ca_bdg Secreted protein acidic and rich in cysteine Ca binding region 2E-05 15 21.40 96 159
tRNA_synt_1c_R1 Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 0.4 1 25.00 97 143
EF-hand_7 EF-hand domain pair 6.5E-18 55 30.00 99 162
Caleosin Caleosin related protein 0.021 5 20.60 100 133
EF-hand_1 EF hand 8.4E-09 25 25.40 100 127
EF-hand_6 EF-hand domain 1.7E-08 24 25.00 101 129
EF-hand_11 EF-hand domain 0.79 1 21.70 101 159
EF-hand_5 EF hand 6.8E-08 22 25.90 104 124
EF-hand_9 EF-hand domain 2.9E-07 21 37.00 104 163
Dockerin_1 Dockerin type I repeat 6.8E-06 17 20.50 109 162
UPF0154 Uncharacterised protein family (UPF0154) 3.3E-05 14 20.90 110 143
EF-hand_4 Cytoskeletal-regulatory complex EF hand 0.00032 11 21.30 111 162
EF-hand_8 EF-hand domain pair 7.4E-14 42 28.00 113 163
TerB Tellurite resistance protein TerB 0.0058 7 22.80 114 163
SRI SRI (Set2 Rpb1 interacting) domain 0.0015 9 20.90 115 141
SurA_N_2 SurA N-terminal domain 0.0028 8 28.50 121 160
Caleosin Caleosin related protein 0.058 4 20.60 131 163
EF-hand_6 EF-hand domain 5.3E-07 20 25.00 136 163
EF-hand_1 EF hand 3.8E-10 29 25.40 136 163
EF-hand_5 EF hand 2E-06 18 25.90 143 161

169

Glyco_hydro_56
SRI
SPARC_Ca_bdg
EF-hand_8
EF-hand_11
tRNA_synt_1c_R1
EF-hand_4
EF-hand_7
Caleosin
EF-hand_1
EF-hand_6
EF-hand_5
EF-hand_9
SurA_N_3
Dockerin_1
TerB
SurA_N_2
UPF0154
EF-hand_8
Glyco_hydro_56
Caleosin
EF-hand_4
EF-hand_5
EF-hand_1
EF-hand_6
SurA_N_3
EF-hand_8
SPARC_Ca_bdg
tRNA_synt_1c_R1
EF-hand_7
Caleosin
EF-hand_1
EF-hand_6
EF-hand_11
EF-hand_5
EF-hand_9
Dockerin_1
UPF0154
EF-hand_4
EF-hand_8
TerB
SRI
SurA_N_2
Caleosin
EF-hand_6
EF-hand_1
EF-hand_5

References:

UPF0154

TerB
3049247 The nucleotide sequence of a plasmid determinant for resistance to tellurium anions. Gene 1988;66:245-258.
10069007 In vivo and in vitro cloning and phenotype characterization of tellurite resistance determinant conferred by plasmid pTE53 of a clinical isolate of Escherichia coli. Folia Microbiol (Praha) 1998;43:589-599.

EF-hand_9

SPARC_Ca_bdg
16121393 The C-terminal Ca2+-binding domain of SPARC confers anti-spreading activity to human urothelial cells. J Cell Physiol. 2006;206:211-220.

EF-hand_7

EF-hand_6

EF-hand_5

EF-hand_4

SurA_N_3

SurA_N_2

EF-hand_11

SRI
15798214 A Novel Domain in Set2 Mediates RNA Polymerase II Interaction and Couples Histone H3 K36 Methylation with Transcript Elongation. Mol Cell Biol 2005;25:3305-3316.
16314571 Solution structure of the Set2-Rpb1 interacting domain of human Set2 and its interaction with the hyperphosphorylated C-terminal domain of Rpb1. Proc Natl Acad Sci U S A. 2005;102:17636-17641.

EF-hand_1

EF-hand_8

Caleosin
11171180 New insights into the mechanisms of lipid-body biogenesis in plants and other organisms. Biochem Soc Trans 2000;28:710-711.

tRNA_synt_1c_R1
10347214 Species barrier to RNA recognition overcome with nonspecific RNA binding domains. J Biol Chem 1999;274:16508-16512.

Dockerin_1
10390637 The cellulosome concept as an efficient microbial strategy for the degradation of insoluble polysaccharides [In Process Citation] Trends Microbiol 1999;7:275-281.
10898940 Secondary structure and calcium-induced folding of the Clostridium thermocellum dockerin domain determined by NMR spectroscopy. Arch Biochem Biophys 2000;379:237-244.

Glyco_hydro_56
8282124 The human sperm protein PH-20 has hyaluronidase activity. FEBS Lett 1993;336:545-548.

Domain	Description	Evalue	Bits	GA	Start	End
Glyco_hydro_56	Hyaluronidase	0.82	-1	18.70	3	33
SRI	SRI (Set2 Rpb1 interacting) domain	0.93	0	20.90	10	30
SPARC_Ca_bdg	Secreted protein acidic and rich in cysteine Ca binding region	4.6E-05	14	21.40	10	86
EF-hand_8	EF-hand domain pair	2.8E-06	17	28.00	12	52
EF-hand_11	EF-hand domain	4.1E-05	15	21.70	20	89
tRNA_synt_1c_R1	Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1	0.0008	10	25.00	24	71
EF-hand_4	Cytoskeletal-regulatory complex EF hand	6.1E-05	13	21.30	24	66
EF-hand_7	EF-hand domain pair	2.7E-19	60	30.00	26	88
Caleosin	Caleosin related protein	0.00088	10	20.60	27	60
EF-hand_1	EF hand	1.2E-11	34	25.40	27	55
EF-hand_6	EF-hand domain	2.6E-10	30	25.00	27	56
EF-hand_5	EF hand	9.1E-09	25	25.90	28	49
EF-hand_9	EF-hand domain	4.8E-09	27	37.00	31	92
SurA_N_3	SurA N-terminal domain	0.00084	9	27.20	32	88
Dockerin_1	Dockerin type I repeat	0.00058	10	20.50	35	76
TerB	Tellurite resistance protein TerB	0.00018	12	22.80	41	101
SurA_N_2	SurA N-terminal domain	0.0015	9	28.50	42	72
UPF0154	Uncharacterised protein family (UPF0154)	0.024	5	20.90	43	71
EF-hand_8	EF-hand domain pair	1E-09	29	28.00	43	89
Glyco_hydro_56	Hyaluronidase	0.00037	10	18.70	58	141
Caleosin	Caleosin related protein	0.0063	7	20.60	60	123
EF-hand_4	Cytoskeletal-regulatory complex EF hand	0.00017	12	21.30	60	89
EF-hand_5	EF hand	4.4E-07	20	25.90	64	87
EF-hand_1	EF hand	1.5E-11	34	25.40	64	90
EF-hand_6	EF-hand domain	2.7E-06	17	25.00	71	89
SurA_N_3	SurA N-terminal domain	0.00027	11	27.20	88	164
EF-hand_8	EF-hand domain pair	1.2E-05	15	28.00	92	127
SPARC_Ca_bdg	Secreted protein acidic and rich in cysteine Ca binding region	2E-05	15	21.40	96	159
tRNA_synt_1c_R1	Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1	0.4	1	25.00	97	143
EF-hand_7	EF-hand domain pair	6.5E-18	55	30.00	99	162
Caleosin	Caleosin related protein	0.021	5	20.60	100	133
EF-hand_1	EF hand	8.4E-09	25	25.40	100	127
EF-hand_6	EF-hand domain	1.7E-08	24	25.00	101	129
EF-hand_11	EF-hand domain	0.79	1	21.70	101	159
EF-hand_5	EF hand	6.8E-08	22	25.90	104	124
EF-hand_9	EF-hand domain	2.9E-07	21	37.00	104	163
Dockerin_1	Dockerin type I repeat	6.8E-06	17	20.50	109	162
UPF0154	Uncharacterised protein family (UPF0154)	3.3E-05	14	20.90	110	143
EF-hand_4	Cytoskeletal-regulatory complex EF hand	0.00032	11	21.30	111	162
EF-hand_8	EF-hand domain pair	7.4E-14	42	28.00	113	163
TerB	Tellurite resistance protein TerB	0.0058	7	22.80	114	163
SRI	SRI (Set2 Rpb1 interacting) domain	0.0015	9	20.90	115	141
SurA_N_2	SurA N-terminal domain	0.0028	8	28.50	121	160
Caleosin	Caleosin related protein	0.058	4	20.60	131	163
EF-hand_6	EF-hand domain	5.3E-07	20	25.00	136	163
EF-hand_1	EF hand	3.8E-10	29	25.40	136	163
EF-hand_5	EF hand	2E-06	18	25.90	143	161