c2pfam

AT3G50420.1 :

Domain Description Evalue Bits GA Start End
TPR_19 Tetratricopeptide repeat 0.09 3 25.00 17 50
AEP1 ATPase expression protein 1 0.035 3 27.00 22 54
PPR_2 PPR repeat family 2.9E-06 17 30.00 26 53
PPR_3 Pentatricopeptide repeat domain 0.037 4 25.00 26 52
PPR PPR repeat 2.3E-06 18 25.00 26 53
PPR_1 PPR repeat 0.0047 7 23.80 26 48
TPR_19 Tetratricopeptide repeat 0.018 6 25.00 128 162
AEP1 ATPase expression protein 1 0.016 4 27.00 132 173
TPR_1 Tetratricopeptide repeat 1 -1 20.40 134 157
RPN7 26S proteasome subunit RPN7 0.11 2 25.30 134 158
PPR_3 Pentatricopeptide repeat domain 0.00019 12 25.00 136 174
PPR_2 PPR repeat family 9.8E-07 19 30.00 136 163
PPR_1 PPR repeat 9.4E-05 12 23.80 136 158
PPR PPR repeat 2.8E-07 21 25.00 136 162
TPR_14 Tetratricopeptide repeat 0.38 2 23.50 138 157
TPR_8 Tetratricopeptide repeat 0.73 1 25.70 141 157
PPR_1 PPR repeat 0.25 1 23.80 161 169
PPR_2 PPR repeat family 4.6E-08 23 30.00 161 210
PPR_3 Pentatricopeptide repeat domain 0.00037 11 25.00 162 209
PPR PPR repeat 0.58 1 25.00 164 176
PPR_long Pentacotripeptide-repeat region of PRORP 3.6E-05 13 27.00 178 254
PPR_1 PPR repeat 0.063 3 23.80 195 207
PPR PPR repeat 0.89 0 25.00 200 215
Clathrin Region in Clathrin and VPS 0.28 1 23.60 229 264
PPR_3 Pentatricopeptide repeat domain 0.17 2 25.00 233 260
PPR_2 PPR repeat family 0.02 5 30.00 233 258
PPR PPR repeat 0.0033 8 25.00 238 258
PPR_1 PPR repeat 0.55 0 23.80 239 258
PPR_1 PPR repeat 0.063 3 23.80 264 291
PPR_2 PPR repeat family 5.7E-15 45 30.00 264 312
PPR_3 Pentatricopeptide repeat domain 0.0053 7 25.00 265 310
PPR PPR repeat 2.3E-06 18 25.00 266 296
PPR_long Pentacotripeptide-repeat region of PRORP 0.014 5 27.00 276 319
PPR_1 PPR repeat 0.00095 9 23.80 295 310
PPR PPR repeat 0.0038 8 25.00 301 317
Clathrin Region in Clathrin and VPS 0.0084 6 23.60 331 392
PPR_3 Pentatricopeptide repeat domain 2.5E-05 14 25.00 339 378
PPR_2 PPR repeat family 0.00017 12 30.00 339 358
PPR PPR repeat 6.6E-06 16 25.00 339 361
PPR_1 PPR repeat 1.3E-05 15 23.80 339 359
RPN7 26S proteasome subunit RPN7 0.0034 7 25.30 339 371
TPR_7 Tetratricopeptide repeat 0.61 1 27.90 343 354
PPR_1 PPR repeat 0.00042 10 23.80 363 383
PPR_2 PPR repeat family 2.8E-09 27 30.00 364 411
PPR PPR repeat 2.1E-07 21 25.00 367 394
PPR_1 PPR repeat 0.72 0 23.80 400 410
PPR_3 Pentatricopeptide repeat domain 2.9E-05 14 25.00 430 467
PPR_2 PPR repeat family 1.9E-06 18 30.00 436 468
PPR_1 PPR repeat 0.0005 10 23.80 441 464
PPR PPR repeat 5.5E-06 17 25.00 441 468
PPR_long Pentacotripeptide-repeat region of PRORP 0.31 0 27.00 443 470
PPR_2 PPR repeat family 4.9E-08 23 30.00 466 513
PPR_1 PPR repeat 0.041 4 23.80 466 494
PPR_3 Pentatricopeptide repeat domain 0.076 3 25.00 467 513
PPR PPR repeat 3.5E-05 14 25.00 469 496
TPR_7 Tetratricopeptide repeat 0.39 1 27.90 478 493
PPR_3 Pentatricopeptide repeat domain 0.14 2 25.00 540 578
TPR_8 Tetratricopeptide repeat 0.033 5 25.70 540 563
TPR_7 Tetratricopeptide repeat 0.034 4 27.90 541 561
PPR PPR repeat 0.00016 12 25.00 541 562
PPR_2 PPR repeat family 0.13 3 30.00 542 561
PPR_1 PPR repeat 0.084 3 23.80 543 561
Clathrin Region in Clathrin and VPS 0.61 0 23.60 544 583
TPR_1 Tetratricopeptide repeat 0.22 2 20.40 547 559
TPR_19 Tetratricopeptide repeat 0.08 4 25.00 551 599
PPR_long Pentacotripeptide-repeat region of PRORP 0.00029 10 27.00 565 619
PPR_1 PPR repeat 7.2E-05 13 23.80 566 594
PPR_2 PPR repeat family 1.5E-13 41 30.00 567 614
PPR_3 Pentatricopeptide repeat domain 4.3E-05 14 25.00 567 615
TPR_8 Tetratricopeptide repeat 0.069 4 25.70 570 597
PPR PPR repeat 8E-11 32 25.00 571 600
TPR_14 Tetratricopeptide repeat 0.065 4 23.50 574 612
RPN7 26S proteasome subunit RPN7 0.22 1 25.30 578 605
TPR_2 Tetratricopeptide repeat 0.032 5 22.40 578 597
TPR_1 Tetratricopeptide repeat 0.026 5 20.40 578 597
Clathrin Region in Clathrin and VPS 0.75 0 23.60 578 601
TPR_7 Tetratricopeptide repeat 0.035 4 27.90 578 596
PPR_long Pentacotripeptide-repeat region of PRORP 1.5E-05 14 27.00 580 664
PPR_3 Pentatricopeptide repeat domain 0.00018 12 25.00 593 648
PPR_1 PPR repeat 0.026 4 23.80 598 610
PPR PPR repeat 7.5E-05 13 25.00 605 635
PPR_2 PPR repeat family 0.085 3 30.00 626 647
PPR PPR repeat 5.9E-05 13 25.00 641 663
PPR_1 PPR repeat 0.00016 11 23.80 641 664
PPR_2 PPR repeat family 0.073 3 30.00 642 663
Clathrin Region in Clathrin and VPS 0.088 3 23.60 642 687
TPR_19 Tetratricopeptide repeat 0.037 5 25.00 647 681
TPR_14 Tetratricopeptide repeat 0.00067 11 23.50 673 713
PPR_3 Pentatricopeptide repeat domain 0.09 3 25.00 677 692
TPR_2 Tetratricopeptide repeat 0.49 1 22.40 687 705
TPR_19 Tetratricopeptide repeat 0.0057 7 25.00 694 724
TPR_2 Tetratricopeptide repeat 0.89 0 22.40 709 724
PPR PPR repeat 0.12 3 25.00 714 733

794

TPR_19
AEP1
PPR_2
PPR_3
PPR
PPR_1
TPR_19
AEP1
TPR_1
RPN7
PPR_3
PPR_2
PPR_1
PPR
TPR_14
TPR_8
PPR_1
PPR_2
PPR_3
PPR
PPR_long
PPR_1
PPR
Clathrin
PPR_3
PPR_2
PPR
PPR_1
PPR_1
PPR_2
PPR_3
PPR
PPR_long
PPR_1
PPR
Clathrin
PPR_3
PPR_2
PPR
PPR_1
RPN7
TPR_7
PPR_1
PPR_2
PPR
PPR_1
PPR_3
PPR_2
PPR_1
PPR
PPR_long
PPR_2
PPR_1
PPR_3
PPR
TPR_7
PPR_3
TPR_8
TPR_7
PPR
PPR_2
PPR_1
Clathrin
TPR_1
TPR_19
PPR_long
PPR_1
PPR_2
PPR_3
TPR_8
PPR
TPR_14
RPN7
TPR_2
TPR_1
Clathrin
TPR_7
PPR_long
PPR_3
PPR_1
PPR
PPR_2
PPR
PPR_1
PPR_2
Clathrin
TPR_19
TPR_14
PPR_3
TPR_2
TPR_19
TPR_2
PPR

References:

AEP1

TPR_2
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

Clathrin
1547490 Folding and trimerization of clathrin subunits at the triskelion hub. Cell 1992;68:899-910.
3480512 Clathrin heavy chain: molecular cloning and complete primary structure. Proc Natl Acad Sci U S A 1987;84:8805-8809.

TPR_14

TPR_1
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

TPR_19

PPR_long

PPR_3

PPR_2

PPR_1

RPN7
15102831 Rpn7 Is required for the structural integrity of the 26 S proteasome of Saccharomyces cerevisiae. J Biol Chem. 2004;279:27168-27176.

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

TPR_7

TPR_8

Domain	Description	Evalue	Bits	GA	Start	End
TPR_19	Tetratricopeptide repeat	0.09	3	25.00	17	50
AEP1	ATPase expression protein 1	0.035	3	27.00	22	54
PPR_2	PPR repeat family	2.9E-06	17	30.00	26	53
PPR_3	Pentatricopeptide repeat domain	0.037	4	25.00	26	52
PPR	PPR repeat	2.3E-06	18	25.00	26	53
PPR_1	PPR repeat	0.0047	7	23.80	26	48
TPR_19	Tetratricopeptide repeat	0.018	6	25.00	128	162
AEP1	ATPase expression protein 1	0.016	4	27.00	132	173
TPR_1	Tetratricopeptide repeat	1	-1	20.40	134	157
RPN7	26S proteasome subunit RPN7	0.11	2	25.30	134	158
PPR_3	Pentatricopeptide repeat domain	0.00019	12	25.00	136	174
PPR_2	PPR repeat family	9.8E-07	19	30.00	136	163
PPR_1	PPR repeat	9.4E-05	12	23.80	136	158
PPR	PPR repeat	2.8E-07	21	25.00	136	162
TPR_14	Tetratricopeptide repeat	0.38	2	23.50	138	157
TPR_8	Tetratricopeptide repeat	0.73	1	25.70	141	157
PPR_1	PPR repeat	0.25	1	23.80	161	169
PPR_2	PPR repeat family	4.6E-08	23	30.00	161	210
PPR_3	Pentatricopeptide repeat domain	0.00037	11	25.00	162	209
PPR	PPR repeat	0.58	1	25.00	164	176
PPR_long	Pentacotripeptide-repeat region of PRORP	3.6E-05	13	27.00	178	254
PPR_1	PPR repeat	0.063	3	23.80	195	207
PPR	PPR repeat	0.89	0	25.00	200	215
Clathrin	Region in Clathrin and VPS	0.28	1	23.60	229	264
PPR_3	Pentatricopeptide repeat domain	0.17	2	25.00	233	260
PPR_2	PPR repeat family	0.02	5	30.00	233	258
PPR	PPR repeat	0.0033	8	25.00	238	258
PPR_1	PPR repeat	0.55	0	23.80	239	258
PPR_1	PPR repeat	0.063	3	23.80	264	291
PPR_2	PPR repeat family	5.7E-15	45	30.00	264	312
PPR_3	Pentatricopeptide repeat domain	0.0053	7	25.00	265	310
PPR	PPR repeat	2.3E-06	18	25.00	266	296
PPR_long	Pentacotripeptide-repeat region of PRORP	0.014	5	27.00	276	319
PPR_1	PPR repeat	0.00095	9	23.80	295	310
PPR	PPR repeat	0.0038	8	25.00	301	317
Clathrin	Region in Clathrin and VPS	0.0084	6	23.60	331	392
PPR_3	Pentatricopeptide repeat domain	2.5E-05	14	25.00	339	378
PPR_2	PPR repeat family	0.00017	12	30.00	339	358
PPR	PPR repeat	6.6E-06	16	25.00	339	361
PPR_1	PPR repeat	1.3E-05	15	23.80	339	359
RPN7	26S proteasome subunit RPN7	0.0034	7	25.30	339	371
TPR_7	Tetratricopeptide repeat	0.61	1	27.90	343	354
PPR_1	PPR repeat	0.00042	10	23.80	363	383
PPR_2	PPR repeat family	2.8E-09	27	30.00	364	411
PPR	PPR repeat	2.1E-07	21	25.00	367	394
PPR_1	PPR repeat	0.72	0	23.80	400	410
PPR_3	Pentatricopeptide repeat domain	2.9E-05	14	25.00	430	467
PPR_2	PPR repeat family	1.9E-06	18	30.00	436	468
PPR_1	PPR repeat	0.0005	10	23.80	441	464
PPR	PPR repeat	5.5E-06	17	25.00	441	468
PPR_long	Pentacotripeptide-repeat region of PRORP	0.31	0	27.00	443	470
PPR_2	PPR repeat family	4.9E-08	23	30.00	466	513
PPR_1	PPR repeat	0.041	4	23.80	466	494
PPR_3	Pentatricopeptide repeat domain	0.076	3	25.00	467	513
PPR	PPR repeat	3.5E-05	14	25.00	469	496
TPR_7	Tetratricopeptide repeat	0.39	1	27.90	478	493
PPR_3	Pentatricopeptide repeat domain	0.14	2	25.00	540	578
TPR_8	Tetratricopeptide repeat	0.033	5	25.70	540	563
TPR_7	Tetratricopeptide repeat	0.034	4	27.90	541	561
PPR	PPR repeat	0.00016	12	25.00	541	562
PPR_2	PPR repeat family	0.13	3	30.00	542	561
PPR_1	PPR repeat	0.084	3	23.80	543	561
Clathrin	Region in Clathrin and VPS	0.61	0	23.60	544	583
TPR_1	Tetratricopeptide repeat	0.22	2	20.40	547	559
TPR_19	Tetratricopeptide repeat	0.08	4	25.00	551	599
PPR_long	Pentacotripeptide-repeat region of PRORP	0.00029	10	27.00	565	619
PPR_1	PPR repeat	7.2E-05	13	23.80	566	594
PPR_2	PPR repeat family	1.5E-13	41	30.00	567	614
PPR_3	Pentatricopeptide repeat domain	4.3E-05	14	25.00	567	615
TPR_8	Tetratricopeptide repeat	0.069	4	25.70	570	597
PPR	PPR repeat	8E-11	32	25.00	571	600
TPR_14	Tetratricopeptide repeat	0.065	4	23.50	574	612
RPN7	26S proteasome subunit RPN7	0.22	1	25.30	578	605
TPR_2	Tetratricopeptide repeat	0.032	5	22.40	578	597
TPR_1	Tetratricopeptide repeat	0.026	5	20.40	578	597
Clathrin	Region in Clathrin and VPS	0.75	0	23.60	578	601
TPR_7	Tetratricopeptide repeat	0.035	4	27.90	578	596
PPR_long	Pentacotripeptide-repeat region of PRORP	1.5E-05	14	27.00	580	664
PPR_3	Pentatricopeptide repeat domain	0.00018	12	25.00	593	648
PPR_1	PPR repeat	0.026	4	23.80	598	610
PPR	PPR repeat	7.5E-05	13	25.00	605	635
PPR_2	PPR repeat family	0.085	3	30.00	626	647
PPR	PPR repeat	5.9E-05	13	25.00	641	663
PPR_1	PPR repeat	0.00016	11	23.80	641	664
PPR_2	PPR repeat family	0.073	3	30.00	642	663
Clathrin	Region in Clathrin and VPS	0.088	3	23.60	642	687
TPR_19	Tetratricopeptide repeat	0.037	5	25.00	647	681
TPR_14	Tetratricopeptide repeat	0.00067	11	23.50	673	713
PPR_3	Pentatricopeptide repeat domain	0.09	3	25.00	677	692
TPR_2	Tetratricopeptide repeat	0.49	1	22.40	687	705
TPR_19	Tetratricopeptide repeat	0.0057	7	25.00	694	724
TPR_2	Tetratricopeptide repeat	0.89	0	22.40	709	724
PPR	PPR repeat	0.12	3	25.00	714	733