c2pfam

AT3G50930.1 :

Domain Description Evalue Bits GA Start End
AAA_11 AAA domain 0.2 2 27.00 32 74
UCR_TM Ubiquinol cytochrome reductase transmembrane region 0.00014 13 19.90 37 83
AAA_assoc Domain associated at C-terminal with AAA 4E-28 88 26.40 83 176
DUF1735 Domain of unknown function (DUF1735) 0.0002 12 21.40 143 171
AAA_16 AAA ATPase domain 5.3E-07 20 32.60 291 340
AAA_29 P-loop containing region of AAA domain 2.6E-05 14 27.00 300 321
AAA_7 P-loop containing dynein motor region 5.1E-05 13 25.80 300 338
DUF815 Protein of unknown function (DUF815) 1.5E-06 18 20.10 301 359
Mg_chelatase Magnesium chelatase, subunit ChlI 0.00079 9 20.30 301 322
AAA_11 AAA domain 9.2E-06 16 27.00 302 347
RuvB_N Holliday junction DNA helicase ruvB N-terminus 2.1E-07 21 20.00 302 359
AAA_22 AAA domain 4E-05 14 27.00 302 345
AAA_24 AAA domain 3.4E-05 14 27.00 302 326
ABC_tran ABC transporter 0.00068 10 23.10 302 323
RNA_helicase RNA helicase 6.4E-05 14 21.50 303 327
AAA_18 AAA domain 7E-05 14 29.40 303 334
AAA_5 AAA domain (dynein-related subfamily) 1E-05 16 20.80 303 340
AAA ATPase family associated with various cellular activities (AAA) 8.6E-19 59 20.80 303 437
AAA_28 AAA domain 0.00019 12 27.00 304 325
Mg_chelatase Magnesium chelatase, subunit ChlI 0.73 -1 20.30 414 438
AAA_24 AAA domain 0.82 -1 27.00 495 511
AAA_11 AAA domain 0.28 1 27.00 501 534

576

AAA_11
UCR_TM
AAA_assoc
DUF1735
AAA_16
AAA_29
AAA_7
DUF815
Mg_chelatase
AAA_11
RuvB_N
AAA_22
AAA_24
ABC_tran
RNA_helicase
AAA_18
AAA_5
AAA
AAA_28
Mg_chelatase
AAA_24
AAA_11

References:

DUF815

AAA_16

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

AAA_11

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_28

DUF1735

RuvB_N
12423347 The RuvABC resolvasome. Eur J Biochem 2002;269:5492-5501.

AAA_assoc

AAA_7

Mg_chelatase
9359397 Mechanism and regulation of Mg-chelatase. Biochem J 1997;327:321-333.
9457877 Reconstitution of an active magnesium chelatase enzyme complex from the bchI, -D, and -H gene products of the green sulfur bacterium Chlorobium vibrioforme expressed in Escherichia coli. J Bacteriol 1998;180:699-704.

AAA_5
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_29

UCR_TM
9651245 Complete structure of the 11-subunit bovine mitochondrial cytochrome bc1 complex [see comments] Science 1998;281:64-71.

RNA_helicase
2546125 Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res 1989;17:4713-4730.

AAA_24

AAA_22

AAA_18

Domain	Description	Evalue	Bits	GA	Start	End
AAA_11	AAA domain	0.2	2	27.00	32	74
UCR_TM	Ubiquinol cytochrome reductase transmembrane region	0.00014	13	19.90	37	83
AAA_assoc	Domain associated at C-terminal with AAA	4E-28	88	26.40	83	176
DUF1735	Domain of unknown function (DUF1735)	0.0002	12	21.40	143	171
AAA_16	AAA ATPase domain	5.3E-07	20	32.60	291	340
AAA_29	P-loop containing region of AAA domain	2.6E-05	14	27.00	300	321
AAA_7	P-loop containing dynein motor region	5.1E-05	13	25.80	300	338
DUF815	Protein of unknown function (DUF815)	1.5E-06	18	20.10	301	359
Mg_chelatase	Magnesium chelatase, subunit ChlI	0.00079	9	20.30	301	322
AAA_11	AAA domain	9.2E-06	16	27.00	302	347
RuvB_N	Holliday junction DNA helicase ruvB N-terminus	2.1E-07	21	20.00	302	359
AAA_22	AAA domain	4E-05	14	27.00	302	345
AAA_24	AAA domain	3.4E-05	14	27.00	302	326
ABC_tran	ABC transporter	0.00068	10	23.10	302	323
RNA_helicase	RNA helicase	6.4E-05	14	21.50	303	327
AAA_18	AAA domain	7E-05	14	29.40	303	334
AAA_5	AAA domain (dynein-related subfamily)	1E-05	16	20.80	303	340
AAA	ATPase family associated with various cellular activities (AAA)	8.6E-19	59	20.80	303	437
AAA_28	AAA domain	0.00019	12	27.00	304	325
Mg_chelatase	Magnesium chelatase, subunit ChlI	0.73	-1	20.30	414	438
AAA_24	AAA domain	0.82	-1	27.00	495	511
AAA_11	AAA domain	0.28	1	27.00	501	534