c2pfam

AT3G51110.1 :

Domain Description Evalue Bits GA Start End
U3_assoc_6 U3 small nucleolar RNA-associated protein 6 0.0005 10 20.90 54 82
NRDE-2 NRDE-2, necessary for RNA interference 6.6E-05 12 34.00 64 135
TPR_17 Tetratricopeptide repeat 0.095 3 24.40 65 91
Suf Suppressor of forked protein (Suf) 3E-05 14 20.40 70 136
HAT HAT (Half-A-TPR) repeat 0.011 6 21.00 71 83
Suf Suppressor of forked protein (Suf) 1.4E-08 25 20.40 73 202
TPR_14 Tetratricopeptide repeat 0.00056 11 23.50 73 100
TPR_2 Tetratricopeptide repeat 0.0007 10 22.40 73 99
TPR_6 Tetratricopeptide repeat 0.02 6 26.30 75 99
TPR_12 Tetratricopeptide repeat 0.0014 9 30.10 79 102
TAtT TRAP transporter T-component 0.022 4 26.50 79 122
TPR_19 Tetratricopeptide repeat 0.0073 7 25.00 84 135
TPR_16 Tetratricopeptide repeat 0.0015 9 32.70 84 120
HAT HAT (Half-A-TPR) repeat 7.8E-06 16 21.00 85 116
U3_assoc_6 U3 small nucleolar RNA-associated protein 6 0.047 4 20.90 90 120
TPR_14 Tetratricopeptide repeat 0.0001 13 23.50 108 146
TPR_2 Tetratricopeptide repeat 0.082 3 22.40 109 137
HAT HAT (Half-A-TPR) repeat 0.01 6 21.00 122 151
TPR_16 Tetratricopeptide repeat 0.0091 7 32.70 125 166
BSD BSD domain 0.029 4 20.40 140 149
TPR_14 Tetratricopeptide repeat 0.00018 12 23.50 142 177
TPR_12 Tetratricopeptide repeat 0.43 1 30.10 147 165
TPR_6 Tetratricopeptide repeat 0.33 2 26.30 150 165
TPR_2 Tetratricopeptide repeat 0.72 0 22.40 153 165
TPR_19 Tetratricopeptide repeat 0.014 6 25.00 153 175
HAT HAT (Half-A-TPR) repeat 6.8E-06 16 21.00 156 183
NRDE-2 NRDE-2, necessary for RNA interference 0.005 6 34.00 172 292
TPR_14 Tetratricopeptide repeat 0.23 3 23.50 174 205
HAT HAT (Half-A-TPR) repeat 4.9E-14 42 21.00 188 216
U3_assoc_6 U3 small nucleolar RNA-associated protein 6 0.019 5 20.90 188 221
TPR_17 Tetratricopeptide repeat 0.76 0 24.40 195 205
Suf Suppressor of forked protein (Suf) 0.0007 9 20.40 208 257
TPR_14 Tetratricopeptide repeat 0.14 3 23.50 211 236
TAtT TRAP transporter T-component 0.61 -1 26.50 211 235
TPR_2 Tetratricopeptide repeat 0.26 2 22.40 216 235
TPR_12 Tetratricopeptide repeat 0.75 0 30.10 225 237
HAT HAT (Half-A-TPR) repeat 0.56 0 21.00 225 240
TPR_19 Tetratricopeptide repeat 0.27 2 25.00 229 276
TAtT TRAP transporter T-component 0.0018 7 26.50 239 277
HAT HAT (Half-A-TPR) repeat 0.036 4 21.00 258 268
TPR_2 Tetratricopeptide repeat 0.23 2 22.40 258 275
Suf Suppressor of forked protein (Suf) 3.7E-05 14 20.40 259 297
HAT HAT (Half-A-TPR) repeat 0.71 0 21.00 278 287
U3_assoc_6 U3 small nucleolar RNA-associated protein 6 0.075 3 20.90 303 336
NRDE-2 NRDE-2, necessary for RNA interference 0.00075 8 34.00 309 338
TPR_16 Tetratricopeptide repeat 0.027 5 32.70 312 354
TPR_17 Tetratricopeptide repeat 0.03 5 24.40 315 341
TPR_14 Tetratricopeptide repeat 1.6E-05 16 23.50 325 366
TPR_6 Tetratricopeptide repeat 0.0073 7 26.30 330 353
TPR_12 Tetratricopeptide repeat 0.82 0 30.10 333 350
Suf Suppressor of forked protein (Suf) 0.025 4 20.40 333 365
TAtT TRAP transporter T-component 0.52 -1 26.50 336 380
BSD BSD domain 0.0038 7 20.40 337 367
HAT HAT (Half-A-TPR) repeat 0.0091 6 21.00 339 347
NRDE-2 NRDE-2, necessary for RNA interference 0.16 1 34.00 364 396
HAT HAT (Half-A-TPR) repeat 0.035 4 21.00 368 376
HAT HAT (Half-A-TPR) repeat 0.69 0 21.00 382 390

413

U3_assoc_6
NRDE-2
TPR_17
Suf
HAT
Suf
TPR_14
TPR_2
TPR_6
TPR_12
TAtT
TPR_19
TPR_16
HAT
U3_assoc_6
TPR_14
TPR_2
HAT
TPR_16
BSD
TPR_14
TPR_12
TPR_6
TPR_2
TPR_19
HAT
NRDE-2
TPR_14
HAT
U3_assoc_6
TPR_17
Suf
TPR_14
TAtT
TPR_2
TPR_12
HAT
TPR_19
TAtT
HAT
TPR_2
Suf
HAT
U3_assoc_6
NRDE-2
TPR_16
TPR_17
TPR_14
TPR_6
TPR_12
Suf
TAtT
BSD
HAT
NRDE-2
HAT
HAT

References:

BSD
11943536 BSD: a novel domain in transcription factors and synapse-associated proteins. Trends Biochem Sci 2002;27:168-170.

TPR_6

TAtT

TPR_2
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

TPR_19

TPR_17

TPR_16

TPR_14

TPR_12

U3_assoc_6
12068309 A large nucleolar U3 ribonucleoprotein required for 18S ribosomal RNA biogenesis. Nature 2002;0:0-0.

HAT
9478129 The HAT helix, a repetitive motif implicated in RNA processing. Trends Biochem Sci 1998;23:15-16.

Suf
9826695 Autoregulation at the level of mRNA 3' end formation of the suppressor of forked gene of Drosophila melanogaster is conserved in Drosophila virilis. Proc Natl Acad Sci U S A 1998;95:14302-14307.

NRDE-2

Domain	Description	Evalue	Bits	GA	Start	End
U3_assoc_6	U3 small nucleolar RNA-associated protein 6	0.0005	10	20.90	54	82
NRDE-2	NRDE-2, necessary for RNA interference	6.6E-05	12	34.00	64	135
TPR_17	Tetratricopeptide repeat	0.095	3	24.40	65	91
Suf	Suppressor of forked protein (Suf)	3E-05	14	20.40	70	136
HAT	HAT (Half-A-TPR) repeat	0.011	6	21.00	71	83
Suf	Suppressor of forked protein (Suf)	1.4E-08	25	20.40	73	202
TPR_14	Tetratricopeptide repeat	0.00056	11	23.50	73	100
TPR_2	Tetratricopeptide repeat	0.0007	10	22.40	73	99
TPR_6	Tetratricopeptide repeat	0.02	6	26.30	75	99
TPR_12	Tetratricopeptide repeat	0.0014	9	30.10	79	102
TAtT	TRAP transporter T-component	0.022	4	26.50	79	122
TPR_19	Tetratricopeptide repeat	0.0073	7	25.00	84	135
TPR_16	Tetratricopeptide repeat	0.0015	9	32.70	84	120
HAT	HAT (Half-A-TPR) repeat	7.8E-06	16	21.00	85	116
U3_assoc_6	U3 small nucleolar RNA-associated protein 6	0.047	4	20.90	90	120
TPR_14	Tetratricopeptide repeat	0.0001	13	23.50	108	146
TPR_2	Tetratricopeptide repeat	0.082	3	22.40	109	137
HAT	HAT (Half-A-TPR) repeat	0.01	6	21.00	122	151
TPR_16	Tetratricopeptide repeat	0.0091	7	32.70	125	166
BSD	BSD domain	0.029	4	20.40	140	149
TPR_14	Tetratricopeptide repeat	0.00018	12	23.50	142	177
TPR_12	Tetratricopeptide repeat	0.43	1	30.10	147	165
TPR_6	Tetratricopeptide repeat	0.33	2	26.30	150	165
TPR_2	Tetratricopeptide repeat	0.72	0	22.40	153	165
TPR_19	Tetratricopeptide repeat	0.014	6	25.00	153	175
HAT	HAT (Half-A-TPR) repeat	6.8E-06	16	21.00	156	183
NRDE-2	NRDE-2, necessary for RNA interference	0.005	6	34.00	172	292
TPR_14	Tetratricopeptide repeat	0.23	3	23.50	174	205
HAT	HAT (Half-A-TPR) repeat	4.9E-14	42	21.00	188	216
U3_assoc_6	U3 small nucleolar RNA-associated protein 6	0.019	5	20.90	188	221
TPR_17	Tetratricopeptide repeat	0.76	0	24.40	195	205
Suf	Suppressor of forked protein (Suf)	0.0007	9	20.40	208	257
TPR_14	Tetratricopeptide repeat	0.14	3	23.50	211	236
TAtT	TRAP transporter T-component	0.61	-1	26.50	211	235
TPR_2	Tetratricopeptide repeat	0.26	2	22.40	216	235
TPR_12	Tetratricopeptide repeat	0.75	0	30.10	225	237
HAT	HAT (Half-A-TPR) repeat	0.56	0	21.00	225	240
TPR_19	Tetratricopeptide repeat	0.27	2	25.00	229	276
TAtT	TRAP transporter T-component	0.0018	7	26.50	239	277
HAT	HAT (Half-A-TPR) repeat	0.036	4	21.00	258	268
TPR_2	Tetratricopeptide repeat	0.23	2	22.40	258	275
Suf	Suppressor of forked protein (Suf)	3.7E-05	14	20.40	259	297
HAT	HAT (Half-A-TPR) repeat	0.71	0	21.00	278	287
U3_assoc_6	U3 small nucleolar RNA-associated protein 6	0.075	3	20.90	303	336
NRDE-2	NRDE-2, necessary for RNA interference	0.00075	8	34.00	309	338
TPR_16	Tetratricopeptide repeat	0.027	5	32.70	312	354
TPR_17	Tetratricopeptide repeat	0.03	5	24.40	315	341
TPR_14	Tetratricopeptide repeat	1.6E-05	16	23.50	325	366
TPR_6	Tetratricopeptide repeat	0.0073	7	26.30	330	353
TPR_12	Tetratricopeptide repeat	0.82	0	30.10	333	350
Suf	Suppressor of forked protein (Suf)	0.025	4	20.40	333	365
TAtT	TRAP transporter T-component	0.52	-1	26.50	336	380
BSD	BSD domain	0.0038	7	20.40	337	367
HAT	HAT (Half-A-TPR) repeat	0.0091	6	21.00	339	347
NRDE-2	NRDE-2, necessary for RNA interference	0.16	1	34.00	364	396
HAT	HAT (Half-A-TPR) repeat	0.035	4	21.00	368	376
HAT	HAT (Half-A-TPR) repeat	0.69	0	21.00	382	390