c2pfam

AT3G51270.1 :

Domain Description Evalue Bits GA Start End
Rio2_N Rio2, N-terminal 2.5E-37 116 21.30 8 89
Pkinase Protein kinase domain 8.7E-06 14 20.40 97 246
RIO1 RIO1 family 0 182 20.40 106 282
Kdo Lipopolysaccharide kinase (Kdo/WaaP) family 1.3E-07 20 20.90 143 246
PIP49_C Pancreatitis induced protein 49 C terminal 5.4E-05 12 28.10 153 259
APH Phosphotransferase enzyme family 3.6E-05 12 22.40 154 217
APH Phosphotransferase enzyme family 1.4E-07 20 22.40 218 252
PIP49_C Pancreatitis induced protein 49 C terminal 0.98 -2 28.10 340 357

461

Rio2_N
Pkinase
RIO1
Kdo
PIP49_C
APH
APH
PIP49_C

References:

Kdo
11069912 Purification and characterization of WaaP from Escherichia coli, a lipopolysaccharide kinase essential for outer membrane stability. J Biol Chem 2001;276:5498-5504.
12021457 Lipopolysaccharide phosphorylating enzymes encoded in the genomes of Gram-negative bacteria are related to the eukaryotic protein kinases. Protein Sci 2002;11:1580-1584.
10531340 A Haemophilus influenzae gene that encodes a membrane bound 3-deoxy-D-manno-octulosonic acid (Kdo) kinase. Possible involvement of kdo phosphorylation in bacterial virulence. J Biol Chem 1999;274:31391-31400.

PIP49_C
11281735 Cloning and expression of the mouse PIP49 (Pancreatitis Induced Protein 49) mRNA which encodes a new putative transmembrane protein activated in the pancreas with acute pancreatitis. Mol Cell Biol Res Commun. 2000;4:188-193.

RIO1
12021457 Lipopolysaccharide phosphorylating enzymes encoded in the genomes of Gram-negative bacteria are related to the eukaryotic protein kinases. Protein Sci 2002;11:1580-1584.
12612080 Late cytoplasmic maturation of the small ribosomal subunit requires RIO proteins in Saccharomyces cerevisiae. Mol Cell Biol 2003;23:2083-2095.
12690111 Rio2p: An evolutionarily conserved, low-abundant protein kinase essential for processing of 20S Pre-rRNA in Saccharomyces cerevisiae. 0;0:0-0.
16008568 Structure and activity of the atypical serine kinase Rio1. FEBS J 2005;272:3698-3713.

Pkinase
1956325 Protein kinase catalytic domain sequence database: identification of conserved features of primary structure and classification of family members. Methods Enzymol 1991;200:38-62.
7768349 Protein kinases 6. The eukaryotic protein kinase superfamily: kinase (catalytic) domain structure and classification. FASEB J 1995;9:576-596.
9020587 The protein kinases of budding yeast: six score and more. Trends Biochem Sci 1997;22:18-22.

Rio2_N
15341724 Crystal structure of A. fulgidus Rio2 defines a new family of serine protein kinases. Structure. 2004;12:1585-1594.

APH
2163618 Cloning of aminoglycoside phosphotransferase (APH) gene from antibiotic- producing strain of Bacillus circulans into a high-expression vector, pKK223-3. Purification, properties and location of the enzyme [published erratum appears in Biochem J 1991 Feb 1 Biochem J 1990;268:671-677.
2167474 PCR cloning of a streptomycin phosphotransferase (aphE) gene from Streptomyces griseus ATCC 12475. Nucleic Acids Res 1990;18:4615-4615.

Domain	Description	Evalue	Bits	GA	Start	End
Rio2_N	Rio2, N-terminal	2.5E-37	116	21.30	8	89
Pkinase	Protein kinase domain	8.7E-06	14	20.40	97	246
RIO1	RIO1 family	0	182	20.40	106	282
Kdo	Lipopolysaccharide kinase (Kdo/WaaP) family	1.3E-07	20	20.90	143	246
PIP49_C	Pancreatitis induced protein 49 C terminal	5.4E-05	12	28.10	153	259
APH	Phosphotransferase enzyme family	3.6E-05	12	22.40	154	217
APH	Phosphotransferase enzyme family	1.4E-07	20	22.40	218	252
PIP49_C	Pancreatitis induced protein 49 C terminal	0.98	-2	28.10	340	357