c2pfam

AT3G52400.1 :

Domain Description Evalue Bits GA Start End
Syntaxin Syntaxin 0 232 25.00 43 248
Occludin_ELL Occludin homology domain 0.0077 7 25.30 50 111
MCPsignal Methyl-accepting chemotaxis protein (MCP) signaling domain 0.36 1 30.00 54 82
TMPIT TMPIT-like protein 0.002 7 22.10 55 164
NPV_P10 Nucleopolyhedrovirus P10 protein 0.051 4 29.80 55 98
MutS_III MutS domain III 0.0055 7 22.50 57 159
Histone_HNS H-NS histone family 0.46 2 21.60 59 93
V-SNARE Vesicle transport v-SNARE protein N-terminus 0.92 0 21.80 59 81
Syntaxin_2 Syntaxin-like protein 0.0032 8 30.50 60 166
NOG1_N NOG1 N-terminal helical domain 0.33 1 22.90 71 109
Laminin_II Laminin Domain II 0.11 3 27.70 77 109
Laminin_II Laminin Domain II 0.15 2 27.70 77 118
Synaptobrevin Synaptobrevin 0.48 0 25.00 77 104
MCPsignal Methyl-accepting chemotaxis protein (MCP) signaling domain 0.35 1 30.00 79 90
Helo_like_N Fungal N-terminal domain of STAND proteins 0.54 -1 27.20 96 113
Occludin_ELL Occludin homology domain 0.18 3 25.30 142 166
NOG1_N NOG1 N-terminal helical domain 0.0006 10 22.90 199 236
MCPsignal Methyl-accepting chemotaxis protein (MCP) signaling domain 6E-05 13 30.00 199 264
Syntaxin_2 Syntaxin-like protein 0.17 2 30.50 206 236
NPV_P10 Nucleopolyhedrovirus P10 protein 0.0046 8 29.80 209 263
Helo_like_N Fungal N-terminal domain of STAND proteins 0.00029 10 27.20 209 263
MutS_III MutS domain III 0.0015 9 22.50 213 260
Histone_HNS H-NS histone family 0.00058 11 21.60 215 286
TMPIT TMPIT-like protein 0.0065 6 22.10 215 259
V-SNARE Vesicle transport v-SNARE protein N-terminus 0.00058 10 21.80 216 242
Occludin_ELL Occludin homology domain 0.83 1 25.30 218 235
Synaptobrevin Synaptobrevin 0.00077 9 25.00 221 303
Laminin_II Laminin Domain II 0.0054 7 27.70 222 276
SNARE SNARE domain 7.1E-20 61 30.00 250 301
YesK YesK-like protein 2.9E-05 14 25.00 268 311

341

Syntaxin
Occludin_ELL
MCPsignal
TMPIT
NPV_P10
MutS_III
Histone_HNS
V-SNARE
Syntaxin_2
NOG1_N
Laminin_II
Laminin_II
Synaptobrevin
MCPsignal
Helo_like_N
Occludin_ELL
NOG1_N
MCPsignal
Syntaxin_2
NPV_P10
Helo_like_N
MutS_III
Histone_HNS
TMPIT
V-SNARE
Occludin_ELL
Synaptobrevin
Laminin_II
SNARE
YesK

References:

MutS_III
9722634 Domain organization and functional analysis of Thermus thermophilus MutS protein [published erratum appears in Nucleic Acids Res 1998 Oct 15;26(20):following 4789] Nucleic Acids Res 1998;26:4153-4159.
8036718 Colon cancer and DNA repair: have mismatches met their match? Trends Genet 1994;10:164-168.
8510668 The yeast gene MSH3 defines a new class of eukaryotic MutS homologues. Mol Gen Genet 1993;239:97-108.
11048710 Crystal structures of mismatch repair protein MutS and its complex with a substrate DNA. Nature 2000;407:703-710.

NPV_P10
9634101 The single-nucleocapsid nucleopolyhedrovirus of Buzura suppressaria encodes a P10 protein. J Gen Virol 1998;79:1553-1562.

Helo_like_N

Syntaxin
11839791 Characterization of temperature-sensitive mutations in the yeast syntaxin 1 homologues Sso1p and Sso2p, and evidence of a distinct function for Sso1p in sporulation. J Cell Sci 2002;115:409-420.
11157748 t-SNARE dephosphorylation promotes SNARE assembly and exocytosis in yeast. EMBO J 2001;20:411-421.
11224573 Vam3p structure reveals conserved and divergent properties of syntaxins. Nat Struct Biol 2001;8:258-264.
11224554 The taming of the SNARE. Nat Struct Biol 2001;8:186-188.
12072456 Gene overexpression as a tool for identifying new trans-acting factors involved in translation termination in Saccharomyces cerevisiae. Genetics 2002;161:585-594.
11737951 The syntaxins. Genome Biol 2001;2:REVIEWS3012.

Occludin_ELL
8276896 Occludin: a novel integral membrane protein localizing at tight junctions. J Cell Biol 1993;123:1777-1788.
8596958 An RNA polymerase II elongation factor encoded by the human ELL gene. Science 1996;271:1873-1876.
16081103 Structure of the conserved cytoplasmic C-terminal domain of occludin: identification of the ZO-1 binding surface. J Mol Biol. 2005;352:151-164.

Synaptobrevin

SNARE
9096343 A conserved domain is present in different families of vesicular fusion proteins: a new superfamily. Proc Natl Acad Sci U S A 1997;94:3046-3051.

Laminin_II
3182802 Laminin, a multidomain protein. The A chain has a unique globular domain and homology with the basement membrane proteoglycan and the laminin B chains. J Biol Chem 1988;263:16536-16544.

YesK

TMPIT

NOG1_N

Syntaxin_2

MCPsignal
1601874 Sequence and characterization of Bacillus subtilis CheW. J Biol Chem 1992;267:12055-12060.

Histone_HNS
7875316 Solution structure of the DNA binding domain of a nucleoid-associated protein, H-NS, from Escherichia coli. FEBS Lett 1995;360:125-131.

V-SNARE
10359592 The Saccharomyces cerevisiae v-SNARE Vti1p is required for multiple membrane transport pathways to the vacuole. Mol Biol Cell 1999;10:1719-1732.

Domain	Description	Evalue	Bits	GA	Start	End
Syntaxin	Syntaxin	0	232	25.00	43	248
Occludin_ELL	Occludin homology domain	0.0077	7	25.30	50	111
MCPsignal	Methyl-accepting chemotaxis protein (MCP) signaling domain	0.36	1	30.00	54	82
TMPIT	TMPIT-like protein	0.002	7	22.10	55	164
NPV_P10	Nucleopolyhedrovirus P10 protein	0.051	4	29.80	55	98
MutS_III	MutS domain III	0.0055	7	22.50	57	159
Histone_HNS	H-NS histone family	0.46	2	21.60	59	93
V-SNARE	Vesicle transport v-SNARE protein N-terminus	0.92	0	21.80	59	81
Syntaxin_2	Syntaxin-like protein	0.0032	8	30.50	60	166
NOG1_N	NOG1 N-terminal helical domain	0.33	1	22.90	71	109
Laminin_II	Laminin Domain II	0.11	3	27.70	77	109
Laminin_II	Laminin Domain II	0.15	2	27.70	77	118
Synaptobrevin	Synaptobrevin	0.48	0	25.00	77	104
MCPsignal	Methyl-accepting chemotaxis protein (MCP) signaling domain	0.35	1	30.00	79	90
Helo_like_N	Fungal N-terminal domain of STAND proteins	0.54	-1	27.20	96	113
Occludin_ELL	Occludin homology domain	0.18	3	25.30	142	166
NOG1_N	NOG1 N-terminal helical domain	0.0006	10	22.90	199	236
MCPsignal	Methyl-accepting chemotaxis protein (MCP) signaling domain	6E-05	13	30.00	199	264
Syntaxin_2	Syntaxin-like protein	0.17	2	30.50	206	236
NPV_P10	Nucleopolyhedrovirus P10 protein	0.0046	8	29.80	209	263
Helo_like_N	Fungal N-terminal domain of STAND proteins	0.00029	10	27.20	209	263
MutS_III	MutS domain III	0.0015	9	22.50	213	260
Histone_HNS	H-NS histone family	0.00058	11	21.60	215	286
TMPIT	TMPIT-like protein	0.0065	6	22.10	215	259
V-SNARE	Vesicle transport v-SNARE protein N-terminus	0.00058	10	21.80	216	242
Occludin_ELL	Occludin homology domain	0.83	1	25.30	218	235
Synaptobrevin	Synaptobrevin	0.00077	9	25.00	221	303
Laminin_II	Laminin Domain II	0.0054	7	27.70	222	276
SNARE	SNARE domain	7.1E-20	61	30.00	250	301
YesK	YesK-like protein	2.9E-05	14	25.00	268	311