c2pfam

AT3G52920.1 :

Domain Description Evalue Bits GA Start End
Metal_resist Heavy-metal resistance 0.0046 8 29.10 10 86
DUF4407 Domain of unknown function (DUF4407) 0.00021 12 31.30 13 150
Atg14 Vacuolar sorting 38 and autophagy-related subunit 14 0.011 6 33.20 13 152
PhoU PhoU domain 0.00034 12 21.30 14 83
TPR_MLP1_2 TPR/MLP1/MLP2-like protein 0.00025 12 30.00 17 129
Exonuc_VII_L Exonuclease VII, large subunit 0.002 9 21.70 21 133
Transcrip_act Transcriptional activator 0 230 27.50 21 165
Spc7 Spc7 kinetochore protein 0.00055 10 34.00 22 162
Phasin Poly(hydroxyalcanoate) granule associated protein (phasin) 9.1E-06 17 41.00 23 104
Prefoldin_2 Prefoldin subunit 0.049 5 21.10 24 62
OmpH Outer membrane protein (OmpH-like) 0.33 2 28.70 28 79
Jnk-SapK_ap_N JNK_SAPK-associated protein-1 0.49 2 24.10 31 72
Baculo_PEP_C Baculovirus polyhedron envelope protein, PEP, C terminus 8.2E-05 14 38.00 36 110
Jnk-SapK_ap_N JNK_SAPK-associated protein-1 0.00015 13 24.10 38 141
DUF148 Domain of unknown function DUF148 0.085 4 23.50 38 76
Mis14 Kinetochore protein Mis14 like 0.0025 9 21.20 41 123
Rota_NSP3 Rotavirus non-structural protein NSP3 7.2E-06 16 25.00 43 148
MerR-DNA-bind MerR, DNA binding 0.0017 10 21.70 47 80
DUF1664 Protein of unknown function (DUF1664) 0.00046 11 30.00 48 112
DUF1690 Protein of Unknown function (DUF1690) 0.0013 10 28.00 50 132
V_ATPase_I V-type ATPase 116kDa subunit family 0.0037 6 26.50 52 148
Nup54 Nucleoporin complex subunit 54 0.0018 9 30.50 52 171
Effector_1 Effector from type III secretion system 5.3E-05 13 23.80 52 126
TMPIT TMPIT-like protein 0.00017 12 22.10 55 134
Suppressor_APC Adenomatous polyposis coli tumour suppressor protein 7.6E-06 17 21.30 58 106
OmpH Outer membrane protein (OmpH-like) 0.00038 12 28.70 63 140
KxDL Uncharacterized conserved protein 0.0036 9 23.80 69 103
Lectin_N Hepatic lectin, N-terminal domain 0.00012 13 25.80 70 120
Prefoldin_2 Prefoldin subunit 0.0005 11 21.10 70 113
DUF148 Domain of unknown function DUF148 0.00066 11 23.50 70 137
DUF948 Bacterial protein of unknown function (DUF948) 0.0014 10 28.10 86 137
Metal_resist Heavy-metal resistance 0.46 2 29.10 92 121
Prefoldin_2 Prefoldin subunit 0.028 5 21.10 92 127
DUF1664 Protein of unknown function (DUF1664) 0.0073 7 30.00 94 140
DUF1690 Protein of Unknown function (DUF1690) 0.13 4 28.00 99 165
PhoU PhoU domain 0.97 1 21.30 118 136
KxDL Uncharacterized conserved protein 0.33 2 23.80 119 138
Phasin Poly(hydroxyalcanoate) granule associated protein (phasin) 0.029 5 41.00 121 172

180

Metal_resist
DUF4407
Atg14
PhoU
TPR_MLP1_2
Exonuc_VII_L
Transcrip_act
Spc7
Phasin
Prefoldin_2
OmpH
Jnk-SapK_ap_N
Baculo_PEP_C
Jnk-SapK_ap_N
DUF148
Mis14
Rota_NSP3
MerR-DNA-bind
DUF1664
DUF1690
V_ATPase_I
Nup54
Effector_1
TMPIT
Suppressor_APC
OmpH
KxDL
Lectin_N
Prefoldin_2
DUF148
DUF948
Metal_resist
Prefoldin_2
DUF1664
DUF1690
PhoU
KxDL
Phasin

References:

V_ATPase_I
10224039 Structure and properties of the vacuolar (H+)-ATPases. J Biol Chem 1999;274:12951-12954.
10340849 Structure and properties of the clathrin-coated vesicle and yeast vacuolar V-ATPases. J Bioenerg Biomembr 1999;31:57-65.

Mis14
15369671 Mis16 and Mis18 are required for CENP-A loading and histone deacetylation at centromeres. Cell. 2004;118:715-729.
16563186 Phylogenetic and structural analysis of centromeric DNA and kinetochore proteins. Genome Biol. 2006;7:R23.

Metal_resist

Prefoldin_2
1748305 Primary structure of the embryo-expressed gene KE2 from the mouse H-2K region. Gene 1991;107:345-346.
7828874 YKE2, a yeast nuclear gene encoding a protein showing homology to mouse KE2 and containing a putative leucine-zipper motif. Gene 1994;151:197-201.
9463374 A novel protein complex promoting formation of functional alpha- and gamma-tubulin. EMBO J 1998;17:952-966.

PhoU
15716271 Crystal structure of a PhoU protein homologue: a new class of metalloprotein containing multinuclear iron clusters. J Biol Chem. 2005;280:15960-15966.

TPR_MLP1_2
9024684 Identification of protein p270/Tpr as a constitutive component of the nuclear pore complex-attached intranuclear filaments. J Cell Biol 1997;136:515-529.
7798308 Tpr, a large coiled coil protein whose amino terminus is involved in activation of oncogenic kinases, is localized to the cytoplasmic surface of the nuclear pore complex. J Cell Biol 1994;127:1515-1526.
10617624 Mlp2p, a component of nuclear pore attached intranuclear filaments, associates with nic96p. J Biol Chem 2000;275:343-350.
12490156 Myosin-like proteins 1 and 2 are not required for silencing or telomere anchoring, but act in the Tel1 pathway of telomere length control. J Struct Biol 2002;140:79-91.

Spc7
15371542 The fission yeast kinetochore component Spc7 associates with the EB1 family member Mal3 and is required for kinetochore-spindle association. Mol Biol Cell 2004;15:5255-5267.

DUF948

OmpH
2318304 Bacterial 'histone-like protein I' (HLP-I) is an outer membrane constituent? FEBS Lett 1990;262:123-126.
15304217 Crystal structure of Skp, a prefoldin-like chaperone that protects soluble and membrane proteins from aggregation. Mol Cell 2004;15:367-374.

TMPIT

DUF1690

DUF148

Rota_NSP3
7871749 Comparative nucleotide and amino acid sequence analysis of the sequence- specific RNA-binding rotavirus nonstructural protein NSP3. Virology 1995;207:327-333.
1326821 Characterization of an oligomerization domain and RNA-binding properties on rotavirus nonstructural protein NS34. Virology 1992;190:68-83.
9755181 Rotavirus RNA-binding protein NSP3 interacts with eIF4GI and evicts the poly(A) binding protein from eIF4F. EMBO J 1998;17:5811-5821.

DUF1664

Atg14

DUF4407

Jnk-SapK_ap_N

Exonuc_VII_L
6284744 Subunit structure of Escherichia coli exonuclease VII. J Biol Chem 1982;257:8799-8805.

Lectin_N
1785139 Recognition of complex oligosaccharides by the multi-subunit asialoglycoprotein receptor. Trends Biochem Sci 1991;16:374-377.

KxDL

Phasin
12099824 Isolation and characterization of polyhydroxyalkanoates inclusions and their associated proteins in Pseudomonas sp. 61-3. Biomacromolecules 2002;3:787-792.

Transcrip_act

Suppressor_APC
12070164 The coiled coil region (amino acids 129-250) of the tumor suppressor protein adenomatous polyposis coli (APC). Its structure and its interaction with chromosome maintenance region 1 (Crm-1). J Biol Chem. 2002;277:32332-32338.

Baculo_PEP_C
8176372 Orgyia pseudotsugata baculovirus p10 and polyhedron envelope protein genes: analysis of their relative expression levels and role in polyhedron structure. J Gen Virol 1994;75:1115-1123.

MerR-DNA-bind
12958362 Molecular basis of metal-ion selectivity and zeptomolar sensitivity by CueR. Science. 2003;301:1383-1387.

Effector_1

Nup54

Domain	Description	Evalue	Bits	GA	Start	End
Metal_resist	Heavy-metal resistance	0.0046	8	29.10	10	86
DUF4407	Domain of unknown function (DUF4407)	0.00021	12	31.30	13	150
Atg14	Vacuolar sorting 38 and autophagy-related subunit 14	0.011	6	33.20	13	152
PhoU	PhoU domain	0.00034	12	21.30	14	83
TPR_MLP1_2	TPR/MLP1/MLP2-like protein	0.00025	12	30.00	17	129
Exonuc_VII_L	Exonuclease VII, large subunit	0.002	9	21.70	21	133
Transcrip_act	Transcriptional activator	0	230	27.50	21	165
Spc7	Spc7 kinetochore protein	0.00055	10	34.00	22	162
Phasin	Poly(hydroxyalcanoate) granule associated protein (phasin)	9.1E-06	17	41.00	23	104
Prefoldin_2	Prefoldin subunit	0.049	5	21.10	24	62
OmpH	Outer membrane protein (OmpH-like)	0.33	2	28.70	28	79
Jnk-SapK_ap_N	JNK_SAPK-associated protein-1	0.49	2	24.10	31	72
Baculo_PEP_C	Baculovirus polyhedron envelope protein, PEP, C terminus	8.2E-05	14	38.00	36	110
Jnk-SapK_ap_N	JNK_SAPK-associated protein-1	0.00015	13	24.10	38	141
DUF148	Domain of unknown function DUF148	0.085	4	23.50	38	76
Mis14	Kinetochore protein Mis14 like	0.0025	9	21.20	41	123
Rota_NSP3	Rotavirus non-structural protein NSP3	7.2E-06	16	25.00	43	148
MerR-DNA-bind	MerR, DNA binding	0.0017	10	21.70	47	80
DUF1664	Protein of unknown function (DUF1664)	0.00046	11	30.00	48	112
DUF1690	Protein of Unknown function (DUF1690)	0.0013	10	28.00	50	132
V_ATPase_I	V-type ATPase 116kDa subunit family	0.0037	6	26.50	52	148
Nup54	Nucleoporin complex subunit 54	0.0018	9	30.50	52	171
Effector_1	Effector from type III secretion system	5.3E-05	13	23.80	52	126
TMPIT	TMPIT-like protein	0.00017	12	22.10	55	134
Suppressor_APC	Adenomatous polyposis coli tumour suppressor protein	7.6E-06	17	21.30	58	106
OmpH	Outer membrane protein (OmpH-like)	0.00038	12	28.70	63	140
KxDL	Uncharacterized conserved protein	0.0036	9	23.80	69	103
Lectin_N	Hepatic lectin, N-terminal domain	0.00012	13	25.80	70	120
Prefoldin_2	Prefoldin subunit	0.0005	11	21.10	70	113
DUF148	Domain of unknown function DUF148	0.00066	11	23.50	70	137
DUF948	Bacterial protein of unknown function (DUF948)	0.0014	10	28.10	86	137
Metal_resist	Heavy-metal resistance	0.46	2	29.10	92	121
Prefoldin_2	Prefoldin subunit	0.028	5	21.10	92	127
DUF1664	Protein of unknown function (DUF1664)	0.0073	7	30.00	94	140
DUF1690	Protein of Unknown function (DUF1690)	0.13	4	28.00	99	165
PhoU	PhoU domain	0.97	1	21.30	118	136
KxDL	Uncharacterized conserved protein	0.33	2	23.80	119	138
Phasin	Poly(hydroxyalcanoate) granule associated protein (phasin)	0.029	5	41.00	121	172