c2pfam

AT3G53170.1 :

Domain Description Evalue Bits GA Start End
Mtf2 Mtf2 family 0.087 1 27.00 72 137
Clathrin Region in Clathrin and VPS 0.14 1 23.60 102 133
PPR_2 PPR repeat family 0.00033 10 30.00 119 154
PPR_long Pentacotripeptide-repeat region of PRORP 5.8E-07 18 27.00 119 229
PPR PPR repeat 0.1 2 25.00 120 136
PPR_3 Pentatricopeptide repeat domain 0.03 4 25.00 125 156
PPR_3 Pentatricopeptide repeat domain 3E-09 26 25.00 145 191
PPR PPR repeat 0.00016 11 25.00 146 175
PPR_2 PPR repeat family 5.3E-07 19 30.00 146 186
PPR_1 PPR repeat 3E-08 22 23.80 174 206
PPR_2 PPR repeat family 4.3E-16 48 30.00 177 227
PPR PPR repeat 7.2E-08 22 25.00 181 207
Clathrin Region in Clathrin and VPS 0.36 0 23.60 185 207
PPR_long Pentacotripeptide-repeat region of PRORP 7.7E-05 11 27.00 195 276
PPR_3 Pentatricopeptide repeat domain 3E-05 13 25.00 196 225
PPR_1 PPR repeat 1.2E-09 27 23.80 210 232
PPR PPR repeat 2.2E-08 23 25.00 216 246
Mtf2 Mtf2 family 0.015 4 27.00 231 258
PPR_3 Pentatricopeptide repeat domain 1.4E-09 27 25.00 236 298
PPR_1 PPR repeat 1E-08 24 23.80 249 276
PPR_2 PPR repeat family 3.4E-09 26 30.00 250 280
PPR PPR repeat 3E-12 35 25.00 251 280
Clathrin Region in Clathrin and VPS 0.76 -1 23.60 251 277
PPR_1 PPR repeat 0.0024 7 23.80 283 296
PPR_2 PPR repeat family 1.5E-09 27 30.00 284 329
PPR PPR repeat 0.00031 10 25.00 288 317
PPR_long Pentacotripeptide-repeat region of PRORP 0.00038 9 27.00 300 374
PPR_long Pentacotripeptide-repeat region of PRORP 2.2E-06 16 27.00 309 418
Mtf2 Mtf2 family 0.3 0 27.00 313 327
PPR_3 Pentatricopeptide repeat domain 1E-08 24 25.00 315 368
PPR_1 PPR repeat 2.8E-07 19 23.80 315 348
PPR_2 PPR repeat family 9.8E-10 28 30.00 319 363
PPR PPR repeat 1.4E-06 17 25.00 323 350
PPR_1 PPR repeat 3.4E-07 19 23.80 354 383
PPR_2 PPR repeat family 2.1E-16 49 30.00 355 403
Mtf2 Mtf2 family 0.029 3 27.00 355 393
PPR PPR repeat 2.4E-09 26 25.00 357 387
PPR_3 Pentatricopeptide repeat domain 6.2E-09 25 25.00 357 402
PPR_long Pentacotripeptide-repeat region of PRORP 0.00039 9 27.00 377 423
PPR_1 PPR repeat 2.2E-07 20 23.80 386 407
Clathrin Region in Clathrin and VPS 0.007 5 23.60 391 443
PPR PPR repeat 3.9E-06 16 25.00 392 420
PPR_3 Pentatricopeptide repeat domain 3E-10 29 25.00 412 471
PPR_long Pentacotripeptide-repeat region of PRORP 0.00011 11 27.00 416 492
PPR_1 PPR repeat 0.00031 10 23.80 424 451
Mtf2 Mtf2 family 0.71 -2 27.00 425 465
PPR_2 PPR repeat family 1.9E-12 36 30.00 426 470
PPR PPR repeat 2.3E-07 20 25.00 429 457
PPR_1 PPR repeat 0.00012 11 23.80 456 471
PPR PPR repeat 0.0065 6 25.00 462 491

499

Mtf2
Clathrin
PPR_2
PPR_long
PPR
PPR_3
PPR_3
PPR
PPR_2
PPR_1
PPR_2
PPR
Clathrin
PPR_long
PPR_3
PPR_1
PPR
Mtf2
PPR_3
PPR_1
PPR_2
PPR
Clathrin
PPR_1
PPR_2
PPR
PPR_long
PPR_long
Mtf2
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
Mtf2
PPR
PPR_3
PPR_long
PPR_1
Clathrin
PPR
PPR_3
PPR_long
PPR_1
Mtf2
PPR_2
PPR
PPR_1
PPR

References:

Mtf2

Clathrin
1547490 Folding and trimerization of clathrin subunits at the triskelion hub. Cell 1992;68:899-910.
3480512 Clathrin heavy chain: molecular cloning and complete primary structure. Proc Natl Acad Sci U S A 1987;84:8805-8809.

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
Mtf2	Mtf2 family	0.087	1	27.00	72	137
Clathrin	Region in Clathrin and VPS	0.14	1	23.60	102	133
PPR_2	PPR repeat family	0.00033	10	30.00	119	154
PPR_long	Pentacotripeptide-repeat region of PRORP	5.8E-07	18	27.00	119	229
PPR	PPR repeat	0.1	2	25.00	120	136
PPR_3	Pentatricopeptide repeat domain	0.03	4	25.00	125	156
PPR_3	Pentatricopeptide repeat domain	3E-09	26	25.00	145	191
PPR	PPR repeat	0.00016	11	25.00	146	175
PPR_2	PPR repeat family	5.3E-07	19	30.00	146	186
PPR_1	PPR repeat	3E-08	22	23.80	174	206
PPR_2	PPR repeat family	4.3E-16	48	30.00	177	227
PPR	PPR repeat	7.2E-08	22	25.00	181	207
Clathrin	Region in Clathrin and VPS	0.36	0	23.60	185	207
PPR_long	Pentacotripeptide-repeat region of PRORP	7.7E-05	11	27.00	195	276
PPR_3	Pentatricopeptide repeat domain	3E-05	13	25.00	196	225
PPR_1	PPR repeat	1.2E-09	27	23.80	210	232
PPR	PPR repeat	2.2E-08	23	25.00	216	246
Mtf2	Mtf2 family	0.015	4	27.00	231	258
PPR_3	Pentatricopeptide repeat domain	1.4E-09	27	25.00	236	298
PPR_1	PPR repeat	1E-08	24	23.80	249	276
PPR_2	PPR repeat family	3.4E-09	26	30.00	250	280
PPR	PPR repeat	3E-12	35	25.00	251	280
Clathrin	Region in Clathrin and VPS	0.76	-1	23.60	251	277
PPR_1	PPR repeat	0.0024	7	23.80	283	296
PPR_2	PPR repeat family	1.5E-09	27	30.00	284	329
PPR	PPR repeat	0.00031	10	25.00	288	317
PPR_long	Pentacotripeptide-repeat region of PRORP	0.00038	9	27.00	300	374
PPR_long	Pentacotripeptide-repeat region of PRORP	2.2E-06	16	27.00	309	418
Mtf2	Mtf2 family	0.3	0	27.00	313	327
PPR_3	Pentatricopeptide repeat domain	1E-08	24	25.00	315	368
PPR_1	PPR repeat	2.8E-07	19	23.80	315	348
PPR_2	PPR repeat family	9.8E-10	28	30.00	319	363
PPR	PPR repeat	1.4E-06	17	25.00	323	350
PPR_1	PPR repeat	3.4E-07	19	23.80	354	383
PPR_2	PPR repeat family	2.1E-16	49	30.00	355	403
Mtf2	Mtf2 family	0.029	3	27.00	355	393
PPR	PPR repeat	2.4E-09	26	25.00	357	387
PPR_3	Pentatricopeptide repeat domain	6.2E-09	25	25.00	357	402
PPR_long	Pentacotripeptide-repeat region of PRORP	0.00039	9	27.00	377	423
PPR_1	PPR repeat	2.2E-07	20	23.80	386	407
Clathrin	Region in Clathrin and VPS	0.007	5	23.60	391	443
PPR	PPR repeat	3.9E-06	16	25.00	392	420
PPR_3	Pentatricopeptide repeat domain	3E-10	29	25.00	412	471
PPR_long	Pentacotripeptide-repeat region of PRORP	0.00011	11	27.00	416	492
PPR_1	PPR repeat	0.00031	10	23.80	424	451
Mtf2	Mtf2 family	0.71	-2	27.00	425	465
PPR_2	PPR repeat family	1.9E-12	36	30.00	426	470
PPR	PPR repeat	2.3E-07	20	25.00	429	457
PPR_1	PPR repeat	0.00012	11	23.80	456	471
PPR	PPR repeat	0.0065	6	25.00	462	491