c2pfam

AT3G53460.1 :

Domain Description Evalue Bits GA Start End
RRM_7 RNA recognition motif 0.006 6 27.00 100 126
RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.2E-22 66 20.70 101 171
RRM_occluded Occluded RNA-recognition motif 0.0035 6 30.00 105 172
RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8.6E-05 11 27.00 110 173
OB_RNB Ribonuclease B OB domain 0.0047 6 20.20 134 147
DbpA DbpA RNA binding domain 0.027 3 23.10 151 173
RRM_7 RNA recognition motif 0.003 7 27.00 258 317
RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.5E-22 68 20.70 259 329
OB_RNB Ribonuclease B OB domain 0.013 4 20.20 295 305
RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.00021 10 27.00 298 331
RRM_occluded Occluded RNA-recognition motif 0.0011 8 30.00 302 333
DbpA DbpA RNA binding domain 0.0018 7 23.10 308 331

342

RRM_7
RRM_1
RRM_occluded
RRM_5
OB_RNB
DbpA
RRM_7
RRM_1
OB_RNB
RRM_5
RRM_occluded
DbpA

References:

RRM_7

RRM_5

RRM_1
8290338 Analysis of the RNA-recognition motif and RS and RGG domains: conservation in metazoan pre-mRNA splicing factors. Nucleic Acid Res 1993;21:5803-5816.

RRM_occluded

DbpA
10481020 Cloning and biochemical characterization of Bacillus subtilis YxiN, a DEAD protein specifically activated by 23S rRNA: delineation of a novel sub-family of bacterial DEAD proteins. Nucleic Acids Res 1999;27:3811-3820.
12460566 The carboxy-terminal domain of the DExDH protein YxiN is sufficient to confer specificity for 23S rRNA. J Mol Biol 2002;324:625-636.

OB_RNB

Domain	Description	Evalue	Bits	GA	Start	End
RRM_7	RNA recognition motif	0.006	6	27.00	100	126
RRM_1	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	7.2E-22	66	20.70	101	171
RRM_occluded	Occluded RNA-recognition motif	0.0035	6	30.00	105	172
RRM_5	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	8.6E-05	11	27.00	110	173
OB_RNB	Ribonuclease B OB domain	0.0047	6	20.20	134	147
DbpA	DbpA RNA binding domain	0.027	3	23.10	151	173
RRM_7	RNA recognition motif	0.003	7	27.00	258	317
RRM_1	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	1.5E-22	68	20.70	259	329
OB_RNB	Ribonuclease B OB domain	0.013	4	20.20	295	305
RRM_5	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	0.00021	10	27.00	298	331
RRM_occluded	Occluded RNA-recognition motif	0.0011	8	30.00	302	333
DbpA	DbpA RNA binding domain	0.0018	7	23.10	308	331