c2pfam

AT3G54170.1 :

Domain Description Evalue Bits GA Start End
Fez1 Fez1 1.8E-05 17 25.00 51 165
DASH_Duo1 DASH complex subunit Duo1 0.005 8 24.40 53 87
FapA Flagellar Assembly Protein A 0.009 6 36.70 53 128
HrpB7 Bacterial type III secretion protein (HrpB7) 3.5E-06 19 27.50 57 169
Lebercilin Ciliary protein causing Leber congenital amaurosis disease 0.32 2 34.30 57 89
TMF_TATA_bd TATA element modulatory factor 1 TATA binding 0.53 2 28.70 59 83
Exonuc_VII_L Exonuclease VII, large subunit 0.0049 8 21.70 59 210
TMPIT TMPIT-like protein 0.71 0 22.10 60 87
DHR10 Designed helical repeat protein 10 domain 0.00064 11 28.40 60 88
Spc7 Spc7 kinetochore protein 0.017 5 34.00 60 88
DUF4201 Domain of unknown function (DUF4201) 0.13 3 31.60 60 84
CALCOCO1 Calcium binding and coiled-coil domain (CALCOCO1) like 0.096 3 30.00 61 132
Yuri_gagarin Yuri gagarin 0.084 4 28.00 62 92
Wtap WTAP/Mum2p family 0.015 7 30.20 63 124
HIP1_clath_bdg Clathrin-binding domain of Huntingtin-interacting protein 1 0.014 7 28.80 63 92
DUF1664 Protein of unknown function (DUF1664) 0.7 1 30.00 63 86
Atg14 Vacuolar sorting 38 and autophagy-related subunit 14 0.1 3 33.20 63 200
MAD Mitotic checkpoint protein 3.6E-08 23 30.00 64 169
SCAB_CC Coiled-coil regions of plant-specific actin-binding protein 0.054 5 25.00 66 93
Csm1_N Csm1 N-terminal domain 1 1 26.30 66 85
ATG16 Autophagy protein 16 (ATG16) 0.0092 8 35.00 69 228
Crescentin Crescentin protein 0.41 1 100.00 69 234
MbeD_MobD MbeD/MobD like 0.66 2 21.10 81 91
FPP Filament-like plant protein, long coiled-coil 1.7E-05 14 40.00 88 230
SPOB_ab Sporulation initiation phospho-transferase B, C-terminal 0.23 3 27.00 102 145
TMPIT TMPIT-like protein 0.00099 10 22.10 108 198
Spc7 Spc7 kinetochore protein 0.0018 8 34.00 108 203
Yuri_gagarin Yuri gagarin 2E-05 16 28.00 108 308
DUF4201 Domain of unknown function (DUF4201) 2.5E-05 15 31.60 110 201
TMF_TATA_bd TATA element modulatory factor 1 TATA binding 0.00077 11 28.70 110 159
Lebercilin Ciliary protein causing Leber congenital amaurosis disease 0.0053 8 34.30 110 229
MCC-bdg_PDZ PDZ domain of MCC-2 bdg protein for Usher syndrome 0.018 7 21.50 110 158
Fib_alpha Fibrinogen alpha/beta chain family 0.012 7 26.20 110 202
DUF1664 Protein of unknown function (DUF1664) 0.23 3 30.00 111 198
DUF2859 Protein of unknown function (DUF2859) 0.00047 11 25.00 114 171
CALCOCO1 Calcium binding and coiled-coil domain (CALCOCO1) like 0.00096 9 30.00 118 317
HrpB7 Bacterial type III secretion protein (HrpB7) 0.96 1 27.50 118 162
FapA Flagellar Assembly Protein A 0.22 1 36.70 120 203
DHR10 Designed helical repeat protein 10 domain 0.28 3 28.40 123 162
Wtap WTAP/Mum2p family 0 165 30.20 127 280
HIP1_clath_bdg Clathrin-binding domain of Huntingtin-interacting protein 1 0.011 8 28.80 129 228
SCAB_CC Coiled-coil regions of plant-specific actin-binding protein 0.00029 12 25.00 135 171
DASH_Hsk3 DASH complex subunit Hsk3 like 0.05 5 24.00 137 167
DUF948 Bacterial protein of unknown function (DUF948) 0.013 7 28.10 138 203
Csm1_N Csm1 N-terminal domain 0.055 5 26.30 138 165
PKcGMP_CC Coiled-coil N-terminus of cGMP-dependent protein kinase 0.19 3 26.20 139 150
Fez1 Fez1 0.0045 9 25.00 139 260
MbeD_MobD MbeD/MobD like 0.1 4 21.10 141 169
Pox_A_type_inc Viral A-type inclusion protein repeat 0.00014 13 21.00 143 159
Hrs_helical Hepatocyte growth factor-regulated tyrosine kinase substrate 0.0015 10 22.40 146 199
COG5 Golgi transport complex subunit 5 0.26 3 29.00 148 187
Csm1_N Csm1 N-terminal domain 0.0026 9 26.30 171 203
MAD Mitotic checkpoint protein 0.015 5 30.00 174 291
Occludin_ELL Occludin homology domain 0.0018 10 25.30 176 250
DUF5798 Family of unknown function (DUF5798) 0.77 1 27.00 176 201
TMF_TATA_bd TATA element modulatory factor 1 TATA binding 0.34 2 28.70 177 201
DHR10 Designed helical repeat protein 10 domain 0.26 3 28.40 182 202
PKcGMP_CC Coiled-coil N-terminus of cGMP-dependent protein kinase 0.0004 12 26.20 185 201
Exonuc_VII_L Exonuclease VII, large subunit 0.073 4 21.70 190 304
FapA Flagellar Assembly Protein A 0.0058 6 36.70 209 321
DUF4201 Domain of unknown function (DUF4201) 0.018 6 31.60 213 299
Spc7 Spc7 kinetochore protein 0.00043 11 34.00 213 299
DHR10 Designed helical repeat protein 10 domain 0.07 5 28.40 221 325
COG5 Golgi transport complex subunit 5 0.0055 8 29.00 222 305
SPOB_ab Sporulation initiation phospho-transferase B, C-terminal 0.0024 9 27.00 229 291
Crescentin Crescentin protein 7.6E-05 13 100.00 233 302
PKcGMP_CC Coiled-coil N-terminus of cGMP-dependent protein kinase 0.057 5 26.20 235 258
Fez1 Fez1 8.9E-05 14 25.00 235 320
DUF1664 Protein of unknown function (DUF1664) 0.0023 9 30.00 236 291
TMF_TATA_bd TATA element modulatory factor 1 TATA binding 0.00047 12 28.70 237 323
Hrs_helical Hepatocyte growth factor-regulated tyrosine kinase substrate 0.83 2 22.40 237 271
Atg14 Vacuolar sorting 38 and autophagy-related subunit 14 0.0048 7 33.20 238 320
FPP Filament-like plant protein, long coiled-coil 0.057 3 40.00 238 305
ATG16 Autophagy protein 16 (ATG16) 0.00017 13 35.00 241 319
Csm1_N Csm1 N-terminal domain 0.34 3 26.30 241 278
MbeD_MobD MbeD/MobD like 0.0039 9 21.10 243 275
Fib_alpha Fibrinogen alpha/beta chain family 0.013 7 26.20 246 300
Occludin_ELL Occludin homology domain 0.001 11 25.30 249 306
MCC-bdg_PDZ PDZ domain of MCC-2 bdg protein for Usher syndrome 4E-05 15 21.50 249 296
Lebercilin Ciliary protein causing Leber congenital amaurosis disease 0.0013 10 34.30 249 312
TMPIT TMPIT-like protein 0.024 5 22.10 250 323
HIP1_clath_bdg Clathrin-binding domain of Huntingtin-interacting protein 1 0.019 7 28.80 251 302
DASH_Hsk3 DASH complex subunit Hsk3 like 0.18 4 24.00 252 274
DUF948 Bacterial protein of unknown function (DUF948) 0.019 7 28.10 253 301
HrpB7 Bacterial type III secretion protein (HrpB7) 0.35 3 27.50 253 325
DUF5798 Family of unknown function (DUF5798) 0.0063 8 27.00 260 312
DUF16 Protein of unknown function DUF16 0.00036 12 23.90 261 319
DASH_Duo1 DASH complex subunit Duo1 0.13 3 24.40 273 307
Csm1_N Csm1 N-terminal domain 0.003 9 26.30 282 316
PKcGMP_CC Coiled-coil N-terminus of cGMP-dependent protein kinase 0.05 5 26.20 283 298
Wtap WTAP/Mum2p family 0.81 1 30.20 283 313
DUF1664 Protein of unknown function (DUF1664) 0.11 4 30.00 292 323

330

Fez1
DASH_Duo1
FapA
HrpB7
Lebercilin
TMF_TATA_bd
Exonuc_VII_L
TMPIT
DHR10
Spc7
DUF4201
CALCOCO1
Yuri_gagarin
Wtap
HIP1_clath_bdg
DUF1664
Atg14
MAD
SCAB_CC
Csm1_N
ATG16
Crescentin
MbeD_MobD
FPP
SPOB_ab
TMPIT
Spc7
Yuri_gagarin
DUF4201
TMF_TATA_bd
Lebercilin
MCC-bdg_PDZ
Fib_alpha
DUF1664
DUF2859
CALCOCO1
HrpB7
FapA
DHR10
Wtap
HIP1_clath_bdg
SCAB_CC
DASH_Hsk3
DUF948
Csm1_N
PKcGMP_CC
Fez1
MbeD_MobD
Pox_A_type_inc
Hrs_helical
COG5
Csm1_N
MAD
Occludin_ELL
DUF5798
TMF_TATA_bd
DHR10
PKcGMP_CC
Exonuc_VII_L
FapA
DUF4201
Spc7
DHR10
COG5
SPOB_ab
Crescentin
PKcGMP_CC
Fez1
DUF1664
TMF_TATA_bd
Hrs_helical
Atg14
FPP
ATG16
Csm1_N
MbeD_MobD
Fib_alpha
Occludin_ELL
MCC-bdg_PDZ
Lebercilin
TMPIT
HIP1_clath_bdg
DASH_Hsk3
DUF948
HrpB7
DUF5798
DUF16
DASH_Duo1
Csm1_N
PKcGMP_CC
Wtap
DUF1664

References:

Csm1_N

Occludin_ELL
8276896 Occludin: a novel integral membrane protein localizing at tight junctions. J Cell Biol 1993;123:1777-1788.
8596958 An RNA polymerase II elongation factor encoded by the human ELL gene. Science 1996;271:1873-1876.
16081103 Structure of the conserved cytoplasmic C-terminal domain of occludin: identification of the ZO-1 binding surface. J Mol Biol. 2005;352:151-164.

DUF1664

Spc7
15371542 The fission yeast kinetochore component Spc7 associates with the EB1 family member Mal3 and is required for kinetochore-spindle association. Mol Biol Cell 2004;15:5255-5267.

SPOB_ab

FapA

Fez1
10097140 The FEZ1 gene at chromosome 8p22 encodes a leucine-zipper protein, and its expression is altered in multiple human tumors. Proc Natl Acad Sci U S A 1999;96:3928-3933.
11504921 FEZ1/LZTS1 gene at 8p22 suppresses cancer cell growth and regulates mitosis. Proc Natl Acad Sci U S A 2001;98:10374-10379.

DUF948

Crescentin

TMPIT

TMF_TATA_bd
1409643 Cloning and chromosomal mapping of a human immunodeficiency virus 1 "TATA" element modulatory factor. Proc Natl Acad Sci U S A. 1992;89:9372-9376.
15128430 TMF is a golgin that binds Rab6 and influences Golgi morphology. BMC Cell Biol. 2004;5:18.
18182439 Localization and domain characterization of Arabidopsis golgin candidates. J Exp Bot. 2007;58:4373-4386.

DUF16
8948633 Complete sequence analysis of the genome of the bacterium Mycoplasma pneumoniae. Nucleic Acids Res 1996;24:4420-4449.
16522803 Crystal structure of the DUF16 domain of MPN010 from Mycoplasma pneumoniae. Protein Sci. 2006;15:921-928.

DUF2859

Wtap

Pox_A_type_inc
2826668 Cloning and characterization of the gene encoding the major protein of the A-type inclusion body of cowpox virus. J Gen Virol 1988;69:35-47.

Atg14

Yuri_gagarin

ATG16
10406794 Apg16p is required for the function of the Apg12p-Apg5p conjugate in the yeast autophagy pathway. EMBO J. 1999;18:3888-3896.
17012802 Expression, purification and crystallization of the Atg5-Atg16 complex essential for autophagy. Acta Crystallograph Sect F Struct Biol Cryst Commun. 2006;62:1021-1023.

MAD
12574116 Mad2 phosphorylation regulates its association with Mad1 and the APC/C. EMBO J 2003;22:797-806.

DASH_Hsk3
11799062 The mitotic spindle is required for loading of the DASH complex onto the kinetochore. Genes Dev 2002;16:183-197.
15640796 The yeast DASH complex forms closed rings on microtubules. Nat Struct Mol Biol. 2005;12:138-143.
15664196 Formation of a dynamic kinetochore- microtubule interface through assembly of the Dam1 ring complex. Mol Cell. 2005;17:277-290.

DASH_Duo1
11799062 The mitotic spindle is required for loading of the DASH complex onto the kinetochore. Genes Dev 2002;16:183-197.
15640796 The yeast DASH complex forms closed rings on microtubules. Nat Struct Mol Biol. 2005;12:138-143.
15664196 Formation of a dynamic kinetochore- microtubule interface through assembly of the Dam1 ring complex. Mol Cell. 2005;17:277-290.

DUF5798

Exonuc_VII_L
6284744 Subunit structure of Escherichia coli exonuclease VII. J Biol Chem 1982;257:8799-8805.

CALCOCO1
14690606 CoCoA, a nuclear receptor coactivator which acts through an N-terminal activation domain of p160 coactivators. Mol Cell 2003;12:1537-1549.

PKcGMP_CC

MCC-bdg_PDZ
11311560 Interaction of MCC2, a novel homologue of MCC tumor suppressor, with PDZ-domain Protein AIE-75. Gene. 2001;267:101-110.
15219944 Expression of AIE-75 PDZ-domain protein induces G2/M cell cycle arrest in human colorectal adenocarcinoma SW480 cells. Cancer Lett. 2004;211:209-218.

DUF4201

FPP

MbeD_MobD
2671664 Characterization of the ColE1 mobilization region and its protein products. Mol Gen Genet 1989;217:488-498.

Hrs_helical
19278655 Hybrid structural model of the complete human ESCRT-0 complex. Structure. 2009;17:406-416.

HIP1_clath_bdg

HrpB7

Fib_alpha
11601975 Crystal structure of native chicken fibrinogen at 2.7 A resolution. Biochemistry. 2001;40:12515-12523.

Lebercilin

DHR10

SCAB_CC

COG5
15932880 Cog1p plays a central role in the organization of the yeast conserved oligomeric Golgi complex. J Biol Chem. 2005;280:27613-27623.

Domain	Description	Evalue	Bits	GA	Start	End
Fez1	Fez1	1.8E-05	17	25.00	51	165
DASH_Duo1	DASH complex subunit Duo1	0.005	8	24.40	53	87
FapA	Flagellar Assembly Protein A	0.009	6	36.70	53	128
HrpB7	Bacterial type III secretion protein (HrpB7)	3.5E-06	19	27.50	57	169
Lebercilin	Ciliary protein causing Leber congenital amaurosis disease	0.32	2	34.30	57	89
TMF_TATA_bd	TATA element modulatory factor 1 TATA binding	0.53	2	28.70	59	83
Exonuc_VII_L	Exonuclease VII, large subunit	0.0049	8	21.70	59	210
TMPIT	TMPIT-like protein	0.71	0	22.10	60	87
DHR10	Designed helical repeat protein 10 domain	0.00064	11	28.40	60	88
Spc7	Spc7 kinetochore protein	0.017	5	34.00	60	88
DUF4201	Domain of unknown function (DUF4201)	0.13	3	31.60	60	84
CALCOCO1	Calcium binding and coiled-coil domain (CALCOCO1) like	0.096	3	30.00	61	132
Yuri_gagarin	Yuri gagarin	0.084	4	28.00	62	92
Wtap	WTAP/Mum2p family	0.015	7	30.20	63	124
HIP1_clath_bdg	Clathrin-binding domain of Huntingtin-interacting protein 1	0.014	7	28.80	63	92
DUF1664	Protein of unknown function (DUF1664)	0.7	1	30.00	63	86
Atg14	Vacuolar sorting 38 and autophagy-related subunit 14	0.1	3	33.20	63	200
MAD	Mitotic checkpoint protein	3.6E-08	23	30.00	64	169
SCAB_CC	Coiled-coil regions of plant-specific actin-binding protein	0.054	5	25.00	66	93
Csm1_N	Csm1 N-terminal domain	1	1	26.30	66	85
ATG16	Autophagy protein 16 (ATG16)	0.0092	8	35.00	69	228
Crescentin	Crescentin protein	0.41	1	100.00	69	234
MbeD_MobD	MbeD/MobD like	0.66	2	21.10	81	91
FPP	Filament-like plant protein, long coiled-coil	1.7E-05	14	40.00	88	230
SPOB_ab	Sporulation initiation phospho-transferase B, C-terminal	0.23	3	27.00	102	145
TMPIT	TMPIT-like protein	0.00099	10	22.10	108	198
Spc7	Spc7 kinetochore protein	0.0018	8	34.00	108	203
Yuri_gagarin	Yuri gagarin	2E-05	16	28.00	108	308
DUF4201	Domain of unknown function (DUF4201)	2.5E-05	15	31.60	110	201
TMF_TATA_bd	TATA element modulatory factor 1 TATA binding	0.00077	11	28.70	110	159
Lebercilin	Ciliary protein causing Leber congenital amaurosis disease	0.0053	8	34.30	110	229
MCC-bdg_PDZ	PDZ domain of MCC-2 bdg protein for Usher syndrome	0.018	7	21.50	110	158
Fib_alpha	Fibrinogen alpha/beta chain family	0.012	7	26.20	110	202
DUF1664	Protein of unknown function (DUF1664)	0.23	3	30.00	111	198
DUF2859	Protein of unknown function (DUF2859)	0.00047	11	25.00	114	171
CALCOCO1	Calcium binding and coiled-coil domain (CALCOCO1) like	0.00096	9	30.00	118	317
HrpB7	Bacterial type III secretion protein (HrpB7)	0.96	1	27.50	118	162
FapA	Flagellar Assembly Protein A	0.22	1	36.70	120	203
DHR10	Designed helical repeat protein 10 domain	0.28	3	28.40	123	162
Wtap	WTAP/Mum2p family	0	165	30.20	127	280
HIP1_clath_bdg	Clathrin-binding domain of Huntingtin-interacting protein 1	0.011	8	28.80	129	228
SCAB_CC	Coiled-coil regions of plant-specific actin-binding protein	0.00029	12	25.00	135	171
DASH_Hsk3	DASH complex subunit Hsk3 like	0.05	5	24.00	137	167
DUF948	Bacterial protein of unknown function (DUF948)	0.013	7	28.10	138	203
Csm1_N	Csm1 N-terminal domain	0.055	5	26.30	138	165
PKcGMP_CC	Coiled-coil N-terminus of cGMP-dependent protein kinase	0.19	3	26.20	139	150
Fez1	Fez1	0.0045	9	25.00	139	260
MbeD_MobD	MbeD/MobD like	0.1	4	21.10	141	169
Pox_A_type_inc	Viral A-type inclusion protein repeat	0.00014	13	21.00	143	159
Hrs_helical	Hepatocyte growth factor-regulated tyrosine kinase substrate	0.0015	10	22.40	146	199
COG5	Golgi transport complex subunit 5	0.26	3	29.00	148	187
Csm1_N	Csm1 N-terminal domain	0.0026	9	26.30	171	203
MAD	Mitotic checkpoint protein	0.015	5	30.00	174	291
Occludin_ELL	Occludin homology domain	0.0018	10	25.30	176	250
DUF5798	Family of unknown function (DUF5798)	0.77	1	27.00	176	201
TMF_TATA_bd	TATA element modulatory factor 1 TATA binding	0.34	2	28.70	177	201
DHR10	Designed helical repeat protein 10 domain	0.26	3	28.40	182	202
PKcGMP_CC	Coiled-coil N-terminus of cGMP-dependent protein kinase	0.0004	12	26.20	185	201
Exonuc_VII_L	Exonuclease VII, large subunit	0.073	4	21.70	190	304
FapA	Flagellar Assembly Protein A	0.0058	6	36.70	209	321
DUF4201	Domain of unknown function (DUF4201)	0.018	6	31.60	213	299
Spc7	Spc7 kinetochore protein	0.00043	11	34.00	213	299
DHR10	Designed helical repeat protein 10 domain	0.07	5	28.40	221	325
COG5	Golgi transport complex subunit 5	0.0055	8	29.00	222	305
SPOB_ab	Sporulation initiation phospho-transferase B, C-terminal	0.0024	9	27.00	229	291
Crescentin	Crescentin protein	7.6E-05	13	100.00	233	302
PKcGMP_CC	Coiled-coil N-terminus of cGMP-dependent protein kinase	0.057	5	26.20	235	258
Fez1	Fez1	8.9E-05	14	25.00	235	320
DUF1664	Protein of unknown function (DUF1664)	0.0023	9	30.00	236	291
TMF_TATA_bd	TATA element modulatory factor 1 TATA binding	0.00047	12	28.70	237	323
Hrs_helical	Hepatocyte growth factor-regulated tyrosine kinase substrate	0.83	2	22.40	237	271
Atg14	Vacuolar sorting 38 and autophagy-related subunit 14	0.0048	7	33.20	238	320
FPP	Filament-like plant protein, long coiled-coil	0.057	3	40.00	238	305
ATG16	Autophagy protein 16 (ATG16)	0.00017	13	35.00	241	319
Csm1_N	Csm1 N-terminal domain	0.34	3	26.30	241	278
MbeD_MobD	MbeD/MobD like	0.0039	9	21.10	243	275
Fib_alpha	Fibrinogen alpha/beta chain family	0.013	7	26.20	246	300
Occludin_ELL	Occludin homology domain	0.001	11	25.30	249	306
MCC-bdg_PDZ	PDZ domain of MCC-2 bdg protein for Usher syndrome	4E-05	15	21.50	249	296
Lebercilin	Ciliary protein causing Leber congenital amaurosis disease	0.0013	10	34.30	249	312
TMPIT	TMPIT-like protein	0.024	5	22.10	250	323
HIP1_clath_bdg	Clathrin-binding domain of Huntingtin-interacting protein 1	0.019	7	28.80	251	302
DASH_Hsk3	DASH complex subunit Hsk3 like	0.18	4	24.00	252	274
DUF948	Bacterial protein of unknown function (DUF948)	0.019	7	28.10	253	301
HrpB7	Bacterial type III secretion protein (HrpB7)	0.35	3	27.50	253	325
DUF5798	Family of unknown function (DUF5798)	0.0063	8	27.00	260	312
DUF16	Protein of unknown function DUF16	0.00036	12	23.90	261	319
DASH_Duo1	DASH complex subunit Duo1	0.13	3	24.40	273	307
Csm1_N	Csm1 N-terminal domain	0.003	9	26.30	282	316
PKcGMP_CC	Coiled-coil N-terminus of cGMP-dependent protein kinase	0.05	5	26.20	283	298
Wtap	WTAP/Mum2p family	0.81	1	30.20	283	313
DUF1664	Protein of unknown function (DUF1664)	0.11	4	30.00	292	323