c2pfam

AT3G54620.1 :

Domain Description Evalue Bits GA Start End
FCD FCD domain 0.0051 7 24.30 43 60
Macoilin Transmembrane protein 3.6E-05 12 32.00 64 307
Syntaxin-6_N Syntaxin 6, N-terminal 0.12 3 24.90 76 109
bZIP_C Basic leucine-zipper C terminal 0.34 2 22.70 114 173
ATG16 Autophagy protein 16 (ATG16) 4.2E-06 17 35.00 180 313
bZIP_Maf bZIP Maf transcription factor 1E-08 26 20.70 228 289
bZIP_2 Basic region leucine zipper 1.5E-09 28 21.30 229 278
bZIP_1 bZIP transcription factor 2.1E-15 47 22.00 230 283
Syntaxin-6_N Syntaxin 6, N-terminal 0.0055 7 24.90 231 313
DUF2353 Uncharacterized coiled-coil protein (DUF2353) 0.00011 11 30.00 231 307
KASH_CCD Coiled-coil region of CCDC155 or KASH 0.00018 11 38.60 234 302
ADIP Afadin- and alpha -actinin-Binding 0.0002 11 29.10 236 312
FCD FCD domain 0.074 3 24.30 246 308
FlaC_arch Flagella accessory protein C (FlaC) 0.052 4 22.00 252 280
YabA Initiation control protein YabA 0.00031 11 30.00 256 308
FlaC_arch Flagella accessory protein C (FlaC) 0.0052 7 22.00 291 313
bZIP_2 Basic region leucine zipper 0.23 2 21.30 292 307
bZIP_C Basic leucine-zipper C terminal 2.4E-17 54 22.70 298 378

403

FCD
Macoilin
Syntaxin-6_N
bZIP_C
ATG16
bZIP_Maf
bZIP_2
bZIP_1
Syntaxin-6_N
DUF2353
KASH_CCD
ADIP
FCD
FlaC_arch
YabA
FlaC_arch
bZIP_2
bZIP_C

References:

bZIP_1

ADIP
12446711 ADIP, a novel Afadin- and alpha-actinin-binding protein localized at cell-cell adherens junctions. J Biol Chem. 2003;278:4103-4111.
17486116 Gamma-tubulin complex-mediated anchoring of spindle microtubules to spindle-pole bodies requires Msd1 in fission yeast. Nat Cell Biol. 2007;9:646-653.

FCD
11013219 Crystal structure of FadR, a fatty acid-responsive transcription factor with a novel acyl coenzyme A-binding fold. EMBO J 2000;19:5167-5177.

Syntaxin-6_N
12082176 Three-dimensional structure of the amino-terminal domain of syntaxin 6, a SNAP-25 C homolog. Proc Natl Acad Sci U S A. 2002;99:9184-9189.

KASH_CCD

Macoilin
17341690 An improved method for the analysis of membrane proteins by mass spectrometry. Physiol Genomics. 2007; [Epub ahead of print]

FlaC_arch
11250034 The archaeal flagellum: a different kind of prokaryotic motility structure. FEMS Microbiol Rev 2001;25:147-174.
11717274 Characterization of flagellum gene families of methanogenic archaea and localization of novel flagellum accessory proteins. J Bacteriol 2001;183:7154-7164.

DUF2353

ATG16
10406794 Apg16p is required for the function of the Apg12p-Apg5p conjugate in the yeast autophagy pathway. EMBO J. 1999;18:3888-3896.
17012802 Expression, purification and crystallization of the Atg5-Atg16 complex essential for autophagy. Acta Crystallograph Sect F Struct Biol Cryst Commun. 2006;62:1021-1023.

YabA

bZIP_Maf
11416124 Phosphorylation of mafa is essential for its transcriptional and biological properties. Mol Cell Biol 2001;21:4441-4452.

bZIP_C
9049271 Characterization of a novel rice bZIP protein which binds to the alpha-globulin promoter. Plant Mol Biol. 1997;33:513-522.

bZIP_2
11906833 bZIP transcription factors in Arabidopsis. Trends Plant Sci 2002;7:106-111.
12867624 bZIP proteins of human gammaherpesviruses. J Gen Virol 2003;84:1941-1949.
7780801 Transcription factors 1: bZIP proteins. Protein Profile 1995;2:101-168.

Domain	Description	Evalue	Bits	GA	Start	End
FCD	FCD domain	0.0051	7	24.30	43	60
Macoilin	Transmembrane protein	3.6E-05	12	32.00	64	307
Syntaxin-6_N	Syntaxin 6, N-terminal	0.12	3	24.90	76	109
bZIP_C	Basic leucine-zipper C terminal	0.34	2	22.70	114	173
ATG16	Autophagy protein 16 (ATG16)	4.2E-06	17	35.00	180	313
bZIP_Maf	bZIP Maf transcription factor	1E-08	26	20.70	228	289
bZIP_2	Basic region leucine zipper	1.5E-09	28	21.30	229	278
bZIP_1	bZIP transcription factor	2.1E-15	47	22.00	230	283
Syntaxin-6_N	Syntaxin 6, N-terminal	0.0055	7	24.90	231	313
DUF2353	Uncharacterized coiled-coil protein (DUF2353)	0.00011	11	30.00	231	307
KASH_CCD	Coiled-coil region of CCDC155 or KASH	0.00018	11	38.60	234	302
ADIP	Afadin- and alpha -actinin-Binding	0.0002	11	29.10	236	312
FCD	FCD domain	0.074	3	24.30	246	308
FlaC_arch	Flagella accessory protein C (FlaC)	0.052	4	22.00	252	280
YabA	Initiation control protein YabA	0.00031	11	30.00	256	308
FlaC_arch	Flagella accessory protein C (FlaC)	0.0052	7	22.00	291	313
bZIP_2	Basic region leucine zipper	0.23	2	21.30	292	307
bZIP_C	Basic leucine-zipper C terminal	2.4E-17	54	22.70	298	378