c2pfam

AT3G54670.1 :

Domain Description Evalue Bits GA Start End
AAA_15 AAA ATPase domain 2.7E-14 43 32.10 10 430
SMC_N RecF/RecN/SMC N terminal domain 0 137 40.00 11 1200
AAA_23 AAA domain 2.3E-18 57 27.00 13 221
AAA_29 P-loop containing region of AAA domain 4.5E-11 32 27.00 13 56
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 1.3E-11 35 27.00 34 70
PDGLE PDGLE domain 0.0013 9 27.00 148 194
Laminin_II Laminin Domain II 0.089 3 27.70 238 329
Baculo_PEP_C Baculovirus polyhedron envelope protein, PEP, C terminus 0.12 2 38.00 274 358
DUF3450 Protein of unknown function (DUF3450) 0.53 -1 26.90 285 359
Laminin_II Laminin Domain II 0.0018 8 27.70 294 364
DUF1664 Protein of unknown function (DUF1664) 0.51 0 30.00 298 356
Baculo_PEP_C Baculovirus polyhedron envelope protein, PEP, C terminus 0.058 3 38.00 410 495
DUF1664 Protein of unknown function (DUF1664) 4.8E-05 13 30.00 414 488
DUF3450 Protein of unknown function (DUF3450) 0.017 4 26.90 414 506
Laminin_II Laminin Domain II 0.0016 8 27.70 415 517
Baculo_PEP_C Baculovirus polyhedron envelope protein, PEP, C terminus 0.026 5 38.00 455 517
Pox_A_type_inc Viral A-type inclusion protein repeat 0.0011 9 21.00 479 492
SMC_hinge SMC proteins Flexible Hinge Domain 1.2E-27 87 21.60 518 632
EzrA Septation ring formation regulator, EzrA 2E-05 13 30.00 655 786
AAA_23 AAA domain 0.0012 9 27.00 668 757
Laminin_II Laminin Domain II 0.00059 10 27.70 675 764
DUF1664 Protein of unknown function (DUF1664) 0.014 5 30.00 676 736
DUF3450 Protein of unknown function (DUF3450) 0.0064 6 26.90 722 776
DUF1664 Protein of unknown function (DUF1664) 0.0024 8 30.00 724 785
Baculo_PEP_C Baculovirus polyhedron envelope protein, PEP, C terminus 0.015 5 38.00 732 780
AAA_23 AAA domain 0.23 2 27.00 760 852
EzrA Septation ring formation regulator, EzrA 1.7E-06 16 30.00 773 923
Laminin_II Laminin Domain II 0.88 -1 27.70 800 837
Baculo_PEP_C Baculovirus polyhedron envelope protein, PEP, C terminus 0.0042 7 38.00 808 916
DUF1664 Protein of unknown function (DUF1664) 5.2E-05 13 30.00 838 927
DUF3450 Protein of unknown function (DUF3450) 3.2E-06 17 26.90 845 932
Laminin_II Laminin Domain II 6.1E-05 13 27.70 854 929
AAA_23 AAA domain 0.22 2 27.00 973 1035
Laminin_II Laminin Domain II 0.32 1 27.70 992 1062
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 2E-07 21 27.00 998 1162
EzrA Septation ring formation regulator, EzrA 0.09 1 30.00 1003 1042
DUF1664 Protein of unknown function (DUF1664) 0.69 0 30.00 1007 1041
SbcCD_C Putative exonuclease SbcCD, C subunit 6.6E-05 13 27.00 1104 1156

1218

AAA_15
SMC_N
AAA_23
AAA_29
AAA_21
PDGLE
Laminin_II
Baculo_PEP_C
DUF3450
Laminin_II
DUF1664
Baculo_PEP_C
DUF1664
DUF3450
Laminin_II
Baculo_PEP_C
Pox_A_type_inc
SMC_hinge
EzrA
AAA_23
Laminin_II
DUF1664
DUF3450
DUF1664
Baculo_PEP_C
AAA_23
EzrA
Laminin_II
Baculo_PEP_C
DUF1664
DUF3450
Laminin_II
AAA_23
Laminin_II
AAA_21
EzrA
DUF1664
SbcCD_C

References:

SbcCD_C

DUF1664

AAA_29

AAA_15

Baculo_PEP_C
8176372 Orgyia pseudotsugata baculovirus p10 and polyhedron envelope protein genes: analysis of their relative expression levels and role in polyhedron structure. J Gen Virol 1994;75:1115-1123.

Laminin_II
3182802 Laminin, a multidomain protein. The A chain has a unique globular domain and homology with the basement membrane proteoglycan and the laminin B chains. J Biol Chem 1988;263:16536-16544.

PDGLE

DUF3450

Pox_A_type_inc
2826668 Cloning and characterization of the gene encoding the major protein of the A-type inclusion body of cowpox virus. J Gen Virol 1988;69:35-47.

SMC_N
10429180 Structural maintenance of chromosomes (SMC) proteins: conserved molecular properties for multiple biological functions. Eur J Biochem 1999;263:6-13.
9640531 SMC protein complexes and higher-order chromosome dynamics. Curr Opin Cell Biol 1998;10:317-322.

AAA_23

SMC_hinge
12411491 Hinge-mediated dimerization of SMC protein is essential for its dynamic interaction with DNA. EMBO J 2002;21:5733-5744.

AAA_21

EzrA
10449747 Identification and characterization of a negative regulator of FtsZ ring formation in Bacillus subtilis. Proc Natl Acad Sci U S A 1999;96:9642-9647.

Domain	Description	Evalue	Bits	GA	Start	End
AAA_15	AAA ATPase domain	2.7E-14	43	32.10	10	430
SMC_N	RecF/RecN/SMC N terminal domain	0	137	40.00	11	1200
AAA_23	AAA domain	2.3E-18	57	27.00	13	221
AAA_29	P-loop containing region of AAA domain	4.5E-11	32	27.00	13	56
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	1.3E-11	35	27.00	34	70
PDGLE	PDGLE domain	0.0013	9	27.00	148	194
Laminin_II	Laminin Domain II	0.089	3	27.70	238	329
Baculo_PEP_C	Baculovirus polyhedron envelope protein, PEP, C terminus	0.12	2	38.00	274	358
DUF3450	Protein of unknown function (DUF3450)	0.53	-1	26.90	285	359
Laminin_II	Laminin Domain II	0.0018	8	27.70	294	364
DUF1664	Protein of unknown function (DUF1664)	0.51	0	30.00	298	356
Baculo_PEP_C	Baculovirus polyhedron envelope protein, PEP, C terminus	0.058	3	38.00	410	495
DUF1664	Protein of unknown function (DUF1664)	4.8E-05	13	30.00	414	488
DUF3450	Protein of unknown function (DUF3450)	0.017	4	26.90	414	506
Laminin_II	Laminin Domain II	0.0016	8	27.70	415	517
Baculo_PEP_C	Baculovirus polyhedron envelope protein, PEP, C terminus	0.026	5	38.00	455	517
Pox_A_type_inc	Viral A-type inclusion protein repeat	0.0011	9	21.00	479	492
SMC_hinge	SMC proteins Flexible Hinge Domain	1.2E-27	87	21.60	518	632
EzrA	Septation ring formation regulator, EzrA	2E-05	13	30.00	655	786
AAA_23	AAA domain	0.0012	9	27.00	668	757
Laminin_II	Laminin Domain II	0.00059	10	27.70	675	764
DUF1664	Protein of unknown function (DUF1664)	0.014	5	30.00	676	736
DUF3450	Protein of unknown function (DUF3450)	0.0064	6	26.90	722	776
DUF1664	Protein of unknown function (DUF1664)	0.0024	8	30.00	724	785
Baculo_PEP_C	Baculovirus polyhedron envelope protein, PEP, C terminus	0.015	5	38.00	732	780
AAA_23	AAA domain	0.23	2	27.00	760	852
EzrA	Septation ring formation regulator, EzrA	1.7E-06	16	30.00	773	923
Laminin_II	Laminin Domain II	0.88	-1	27.70	800	837
Baculo_PEP_C	Baculovirus polyhedron envelope protein, PEP, C terminus	0.0042	7	38.00	808	916
DUF1664	Protein of unknown function (DUF1664)	5.2E-05	13	30.00	838	927
DUF3450	Protein of unknown function (DUF3450)	3.2E-06	17	26.90	845	932
Laminin_II	Laminin Domain II	6.1E-05	13	27.70	854	929
AAA_23	AAA domain	0.22	2	27.00	973	1035
Laminin_II	Laminin Domain II	0.32	1	27.70	992	1062
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	2E-07	21	27.00	998	1162
EzrA	Septation ring formation regulator, EzrA	0.09	1	30.00	1003	1042
DUF1664	Protein of unknown function (DUF1664)	0.69	0	30.00	1007	1041
SbcCD_C	Putative exonuclease SbcCD, C subunit	6.6E-05	13	27.00	1104	1156