c2pfam

AT3G55110.1 :

Domain Description Evalue Bits GA Start End
Rad17 Rad17 cell cycle checkpoint protein 0.00012 12 19.70 82 125
MeaB Methylmalonyl Co-A mutase-associated GTPase MeaB 2E-05 14 23.10 84 131
AAA_16 AAA ATPase domain 2.8E-06 18 32.60 90 141
RsgA_GTPase RsgA GTPase 2.3E-06 18 30.00 91 126
ABC_tran ABC transporter 1.6E-28 90 23.10 92 245
AAA_25 AAA domain 0.00014 12 27.00 99 178
AAA_22 AAA domain 0.00053 11 27.00 101 127
AAA_29 P-loop containing region of AAA domain 3.6E-07 20 27.00 102 123
SMC_N RecF/RecN/SMC N terminal domain 0.00029 11 40.00 103 275
APS_kinase Adenylylsulphate kinase 0.005 7 20.70 104 142
Dynamin_N Dynamin family 0.00034 11 21.00 105 126
AAA_23 AAA domain 0.00038 11 27.00 106 122
AAA_28 AAA domain 0.00016 12 27.00 106 125
MMR_HSR1 GTPase of unknown function 2E-05 15 24.50 106 138
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.0013 9 27.00 106 123
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.0016 8 27.00 215 276
APS_kinase Adenylylsulphate kinase 0.13 2 20.70 250 278
ABC2_membrane_7 ABC-2 type transporter 5.8E-08 22 22.70 274 369
ABC2_membrane ABC-2 type transporter 0 143 25.50 404 612

708

Rad17
MeaB
AAA_16
RsgA_GTPase
ABC_tran
AAA_25
AAA_22
AAA_29
SMC_N
APS_kinase
Dynamin_N
AAA_23
AAA_28
MMR_HSR1
AAA_21
AAA_21
APS_kinase
ABC2_membrane_7
ABC2_membrane

References:

AAA_16

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

ABC2_membrane
1303751 A new subfamily of bacterial ABC-type transport systems catalyzing export of drugs and carbohydrates. Protein Sci 1992;1:1326-1332.

RsgA_GTPase

AAA_28

AAA_21

APS_kinase
9786849 Adenosine 5'-phosphosulfate kinase from Penicillium chrysogenum. site- directed mutagenesis at putative phosphoryl-accepting and ATP P-loop residues. J Biol Chem 1998;273:28583-28589.

Dynamin_N
8939066 Dynamin GTPase, a force-generating molecular switch. Bioessays 1996;18:885-893.
2144893 Molecular cloning of the microtubule-associated mechanochemical enzyme dynamin reveals homology with a new family of GTP-binding proteins. Nature 1990;347:256-261.

MMR_HSR1
8180467 Structure and evolution of a member of a new subfamily of GTP-binding proteins mapping to the human MHC class I region. Mamm Genome 1994;5:100-105.

ABC2_membrane_7

AAA_29

Rad17
10208430 hRAD17, a structural homolog of the Schizosaccharomyces pombe RAD17 cell cycle checkpoint gene, stimulates p53 accumulation. Oncogene 1999;18:1689-1699.

AAA_25

SMC_N
10429180 Structural maintenance of chromosomes (SMC) proteins: conserved molecular properties for multiple biological functions. Eur J Biochem 1999;263:6-13.
9640531 SMC protein complexes and higher-order chromosome dynamics. Curr Opin Cell Biol 1998;10:317-322.

AAA_23

AAA_22

MeaB

Domain	Description	Evalue	Bits	GA	Start	End
Rad17	Rad17 cell cycle checkpoint protein	0.00012	12	19.70	82	125
MeaB	Methylmalonyl Co-A mutase-associated GTPase MeaB	2E-05	14	23.10	84	131
AAA_16	AAA ATPase domain	2.8E-06	18	32.60	90	141
RsgA_GTPase	RsgA GTPase	2.3E-06	18	30.00	91	126
ABC_tran	ABC transporter	1.6E-28	90	23.10	92	245
AAA_25	AAA domain	0.00014	12	27.00	99	178
AAA_22	AAA domain	0.00053	11	27.00	101	127
AAA_29	P-loop containing region of AAA domain	3.6E-07	20	27.00	102	123
SMC_N	RecF/RecN/SMC N terminal domain	0.00029	11	40.00	103	275
APS_kinase	Adenylylsulphate kinase	0.005	7	20.70	104	142
Dynamin_N	Dynamin family	0.00034	11	21.00	105	126
AAA_23	AAA domain	0.00038	11	27.00	106	122
AAA_28	AAA domain	0.00016	12	27.00	106	125
MMR_HSR1	GTPase of unknown function	2E-05	15	24.50	106	138
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.0013	9	27.00	106	123
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.0016	8	27.00	215	276
APS_kinase	Adenylylsulphate kinase	0.13	2	20.70	250	278
ABC2_membrane_7	ABC-2 type transporter	5.8E-08	22	22.70	274	369
ABC2_membrane	ABC-2 type transporter	0	143	25.50	404	612