c2pfam

AT3G55320.1 :

Domain Description Evalue Bits GA Start End
ABC_membrane ABC transporter transmembrane region 0 157 22.00 88 364
ABC_tran ABC transporter 1.2E-27 88 23.10 435 579
AAA_7 P-loop containing dynein motor region 0.011 6 25.80 438 460
Zeta_toxin Zeta toxin 0.00041 10 20.10 441 483
AAA_15 AAA ATPase domain 8E-06 16 32.10 442 469
AAA_29 P-loop containing region of AAA domain 0.00015 12 27.00 442 459
SMC_N RecF/RecN/SMC N terminal domain 0.00017 12 40.00 442 459
RsgA_GTPase RsgA GTPase 0.021 5 30.00 442 462
AAA_22 AAA domain 0.02 6 27.00 443 498
AAA_30 AAA domain 0.11 3 27.00 443 468
AAA_23 AAA domain 0.0018 9 27.00 443 459
AAA_16 AAA ATPase domain 0.0082 7 32.60 443 578
DUF87 Domain of unknown function DUF87 0.36 1 20.90 443 465
Ploopntkinase3 P-loop Nucleotide Kinase3 0.2 2 27.00 444 467
NB-ARC NB-ARC domain 0.14 2 23.50 444 459
G-alpha G-protein alpha subunit 0.0031 7 20.10 444 470
MMR_HSR1 GTPase of unknown function 0.023 5 24.50 445 459
APS_kinase Adenylylsulphate kinase 0.025 5 20.70 445 482
AAA_33 AAA domain 0.57 1 27.00 445 459
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.00033 11 27.00 446 465
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.32 1 27.00 567 606
SMC_N RecF/RecN/SMC N terminal domain 0.052 3 40.00 571 620
ABC_membrane ABC transporter transmembrane region 0 144 22.00 843 1107
DUF1240 Protein of unknown function (DUF1240) 0.00049 11 22.00 845 890
ABC_tran ABC transporter 1.9E-31 100 23.10 1177 1325
AAA_15 AAA ATPase domain 0.18 2 32.10 1178 1206
AAA_7 P-loop containing dynein motor region 0.019 5 25.80 1181 1206
AAA_29 P-loop containing region of AAA domain 9.7E-05 13 27.00 1183 1204
AAA_16 AAA ATPase domain 3.7E-05 15 32.60 1185 1224
AAA_30 AAA domain 0.0001 13 27.00 1185 1340
RsgA_GTPase RsgA GTPase 0.0012 9 30.00 1186 1207
AAA_22 AAA domain 0.0038 8 27.00 1187 1214
APS_kinase Adenylylsulphate kinase 0.0026 8 20.70 1187 1224
AAA_23 AAA domain 0.023 6 27.00 1188 1204
G-alpha G-protein alpha subunit 0.011 5 20.10 1189 1214
SMC_N RecF/RecN/SMC N terminal domain 0.038 4 40.00 1189 1204
NB-ARC NB-ARC domain 0.0038 7 23.50 1189 1212
DUF87 Domain of unknown function DUF87 0.0013 9 20.90 1190 1221
AAA_33 AAA domain 0.004 8 27.00 1190 1206
Zeta_toxin Zeta toxin 0.00079 9 20.10 1190 1228
MMR_HSR1 GTPase of unknown function 0.0096 7 24.50 1190 1205
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.045 4 27.00 1191 1208
Ploopntkinase3 P-loop Nucleotide Kinase3 0.012 6 27.00 1192 1293
SMC_N RecF/RecN/SMC N terminal domain 0.0021 8 40.00 1298 1367

1408

ABC_membrane
ABC_tran
AAA_7
Zeta_toxin
AAA_15
AAA_29
SMC_N
RsgA_GTPase
AAA_22
AAA_30
AAA_23
AAA_16
DUF87
Ploopntkinase3
NB-ARC
G-alpha
MMR_HSR1
APS_kinase
AAA_33
AAA_21
AAA_21
SMC_N
ABC_membrane
DUF1240
ABC_tran
AAA_15
AAA_7
AAA_29
AAA_16
AAA_30
RsgA_GTPase
AAA_22
APS_kinase
AAA_23
G-alpha
SMC_N
NB-ARC
DUF87
AAA_33
Zeta_toxin
MMR_HSR1
AAA_21
Ploopntkinase3
SMC_N

References:

AAA_16

AAA_15

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

G-alpha
8073283 Structures of active conformations of Gi alpha 1 and the mechanism of GTP hydrolysis. Science 1994;265:1405-1412.
8851656 How G proteins work: a continuing story. Trends Biochem Sci 1996;21:41-44.

ABC_membrane

RsgA_GTPase

DUF1240

NB-ARC
9545207 The NB-ARC domain: a novel signalling motif shared by plant resistance gene products and regulators of cell death in animals. Curr Biol 1998;8:226-227.

APS_kinase
9786849 Adenosine 5'-phosphosulfate kinase from Penicillium chrysogenum. site- directed mutagenesis at putative phosphoryl-accepting and ATP P-loop residues. J Biol Chem 1998;273:28583-28589.

Zeta_toxin
12571357 Crystal structure of the plasmid maintenance system epsilon/zeta: functional mechanism of toxin zeta and inactivation by epsilon 2 zeta 2 complex formation. Proc Natl Acad Sci U S A 2003;100:1661-1666.

AAA_7

Ploopntkinase3

MMR_HSR1
8180467 Structure and evolution of a member of a new subfamily of GTP-binding proteins mapping to the human MHC class I region. Mamm Genome 1994;5:100-105.

AAA_33

AAA_30

AAA_29

DUF87

SMC_N
10429180 Structural maintenance of chromosomes (SMC) proteins: conserved molecular properties for multiple biological functions. Eur J Biochem 1999;263:6-13.
9640531 SMC protein complexes and higher-order chromosome dynamics. Curr Opin Cell Biol 1998;10:317-322.

AAA_23

AAA_22

AAA_21

Domain	Description	Evalue	Bits	GA	Start	End
ABC_membrane	ABC transporter transmembrane region	0	157	22.00	88	364
ABC_tran	ABC transporter	1.2E-27	88	23.10	435	579
AAA_7	P-loop containing dynein motor region	0.011	6	25.80	438	460
Zeta_toxin	Zeta toxin	0.00041	10	20.10	441	483
AAA_15	AAA ATPase domain	8E-06	16	32.10	442	469
AAA_29	P-loop containing region of AAA domain	0.00015	12	27.00	442	459
SMC_N	RecF/RecN/SMC N terminal domain	0.00017	12	40.00	442	459
RsgA_GTPase	RsgA GTPase	0.021	5	30.00	442	462
AAA_22	AAA domain	0.02	6	27.00	443	498
AAA_30	AAA domain	0.11	3	27.00	443	468
AAA_23	AAA domain	0.0018	9	27.00	443	459
AAA_16	AAA ATPase domain	0.0082	7	32.60	443	578
DUF87	Domain of unknown function DUF87	0.36	1	20.90	443	465
Ploopntkinase3	P-loop Nucleotide Kinase3	0.2	2	27.00	444	467
NB-ARC	NB-ARC domain	0.14	2	23.50	444	459
G-alpha	G-protein alpha subunit	0.0031	7	20.10	444	470
MMR_HSR1	GTPase of unknown function	0.023	5	24.50	445	459
APS_kinase	Adenylylsulphate kinase	0.025	5	20.70	445	482
AAA_33	AAA domain	0.57	1	27.00	445	459
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.00033	11	27.00	446	465
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.32	1	27.00	567	606
SMC_N	RecF/RecN/SMC N terminal domain	0.052	3	40.00	571	620
ABC_membrane	ABC transporter transmembrane region	0	144	22.00	843	1107
DUF1240	Protein of unknown function (DUF1240)	0.00049	11	22.00	845	890
ABC_tran	ABC transporter	1.9E-31	100	23.10	1177	1325
AAA_15	AAA ATPase domain	0.18	2	32.10	1178	1206
AAA_7	P-loop containing dynein motor region	0.019	5	25.80	1181	1206
AAA_29	P-loop containing region of AAA domain	9.7E-05	13	27.00	1183	1204
AAA_16	AAA ATPase domain	3.7E-05	15	32.60	1185	1224
AAA_30	AAA domain	0.0001	13	27.00	1185	1340
RsgA_GTPase	RsgA GTPase	0.0012	9	30.00	1186	1207
AAA_22	AAA domain	0.0038	8	27.00	1187	1214
APS_kinase	Adenylylsulphate kinase	0.0026	8	20.70	1187	1224
AAA_23	AAA domain	0.023	6	27.00	1188	1204
G-alpha	G-protein alpha subunit	0.011	5	20.10	1189	1214
SMC_N	RecF/RecN/SMC N terminal domain	0.038	4	40.00	1189	1204
NB-ARC	NB-ARC domain	0.0038	7	23.50	1189	1212
DUF87	Domain of unknown function DUF87	0.0013	9	20.90	1190	1221
AAA_33	AAA domain	0.004	8	27.00	1190	1206
Zeta_toxin	Zeta toxin	0.00079	9	20.10	1190	1228
MMR_HSR1	GTPase of unknown function	0.0096	7	24.50	1190	1205
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.045	4	27.00	1191	1208
Ploopntkinase3	P-loop Nucleotide Kinase3	0.012	6	27.00	1192	1293
SMC_N	RecF/RecN/SMC N terminal domain	0.0021	8	40.00	1298	1367