c2pfam

AT3G55350.1 :

Domain Description Evalue Bits GA Start End
CEP44 Centrosomal spindle body, CEP44 8.9E-05 12 27.00 66 96
HTH_Tnp_4 Helix-turn-helix of DDE superfamily endonuclease 3.8E-06 16 27.00 108 156
HTH_38 Helix-turn-helix domain 0.00016 11 27.00 109 143
Sigma70_r4 Sigma-70, region 4 2.9E-06 16 22.70 114 146
HTH_23 Homeodomain-like domain 5.5E-05 12 24.60 116 145
Plant_tran Plant transposon protein 4E-16 48 20.70 171 361
DDE_Tnp_4 DDE superfamily endonuclease 1.7E-32 101 24.80 187 353

406

CEP44
HTH_Tnp_4
HTH_38
Sigma70_r4
HTH_23
Plant_tran
DDE_Tnp_4

References:

HTH_Tnp_4

DDE_Tnp_4

Sigma70_r4
11931761 Structure of the bacterial RNA polymerase promoter specificity sigma subunit. Mol Cell 2002;9:527-539.

Plant_tran
11675493 P instability factor: an active maize transposon system associated with the amplification of Tourist-like MITEs and a new superfamily of transposases. Proc Natl Acad Sci U S A. 2001;98:12572-12577.
12520303 The plant MITE mPing is mobilized in anther culture. Nature. 2003;421:167-170.

CEP44

HTH_23

HTH_38

Domain	Description	Evalue	Bits	GA	Start	End
CEP44	Centrosomal spindle body, CEP44	8.9E-05	12	27.00	66	96
HTH_Tnp_4	Helix-turn-helix of DDE superfamily endonuclease	3.8E-06	16	27.00	108	156
HTH_38	Helix-turn-helix domain	0.00016	11	27.00	109	143
Sigma70_r4	Sigma-70, region 4	2.9E-06	16	22.70	114	146
HTH_23	Homeodomain-like domain	5.5E-05	12	24.60	116	145
Plant_tran	Plant transposon protein	4E-16	48	20.70	171	361
DDE_Tnp_4	DDE superfamily endonuclease	1.7E-32	101	24.80	187	353