c2pfam

AT3G55600.1 :

Domain Description Evalue Bits GA Start End
DUF3810 Protein of unknown function (DUF3810) 0.0023 7 28.00 4 77
Use1 Membrane fusion protein Use1 0 215 29.20 6 240
DUF3450 Protein of unknown function (DUF3450) 0.14 1 26.90 20 45
Snapin_Pallidin Snapin/Pallidin 0.00016 12 29.60 21 70
PriC Primosomal replication protein priC 5.6E-05 12 23.20 22 191
Prominin Prominin 0.27 -2 31.00 28 43
ISG65-75 Invariant surface glycoprotein 0.0049 5 20.60 28 83
DUF3450 Protein of unknown function (DUF3450) 0.00028 10 26.90 119 194
Prominin Prominin 5.9E-06 14 31.00 137 238
Snapin_Pallidin Snapin/Pallidin 0.0093 6 29.60 141 182
ISG65-75 Invariant surface glycoprotein 0.0075 5 20.60 142 213
PriC Primosomal replication protein priC 0.028 4 23.20 150 189
DUF3810 Protein of unknown function (DUF3810) 0.00045 9 28.00 152 222
Sec20 Sec20 7.3E-06 15 27.00 152 237
Orf78 Orf78 (ac78) 0.00059 10 28.00 192 237

240

DUF3810
Use1
DUF3450
Snapin_Pallidin
PriC
Prominin
ISG65-75
DUF3450
Prominin
Snapin_Pallidin
ISG65-75
PriC
DUF3810
Sec20
Orf78

References:

Prominin
11467842 Rat prominin, like its mouse and human orthologues, is a pentaspan membrane glycoprotein. Biochem Biophys Res Commun 2001;285:939-944.
10587575 A frameshift mutation in prominin (mouse)-like 1 causes human retinal degeneration. Hum Mol Genet 2000;9:27-34.

PriC

Use1
12853481 Use1p is a yeast SNARE protein required for retrograde traffic to the ER. EMBO J. 2003;22:3664-3674.

Snapin_Pallidin

DUF3810

DUF3450

Sec20
8334998 The TIP1 gene of Saccharomyces cerevisiae encodes an 80 kDa cytoplasmic protein that interacts with the cytoplasmic domain of Sec20p. EMBO J 1993;12:2831-2840.

Orf78

ISG65-75
1587856 Molecular characterization of two invariant surface glycoproteins specific for the bloodstream stage of Trypanosoma brucei. J Biol Chem. 1992;267:10797-10803.
18538880 Heterologous expression, purification and characterisation of the extracellular domain of trypanosome invariant surface glycoprotein ISG75. J Biotechnol. 2008;135:247-254.

Domain	Description	Evalue	Bits	GA	Start	End
DUF3810	Protein of unknown function (DUF3810)	0.0023	7	28.00	4	77
Use1	Membrane fusion protein Use1	0	215	29.20	6	240
DUF3450	Protein of unknown function (DUF3450)	0.14	1	26.90	20	45
Snapin_Pallidin	Snapin/Pallidin	0.00016	12	29.60	21	70
PriC	Primosomal replication protein priC	5.6E-05	12	23.20	22	191
Prominin	Prominin	0.27	-2	31.00	28	43
ISG65-75	Invariant surface glycoprotein	0.0049	5	20.60	28	83
DUF3450	Protein of unknown function (DUF3450)	0.00028	10	26.90	119	194
Prominin	Prominin	5.9E-06	14	31.00	137	238
Snapin_Pallidin	Snapin/Pallidin	0.0093	6	29.60	141	182
ISG65-75	Invariant surface glycoprotein	0.0075	5	20.60	142	213
PriC	Primosomal replication protein priC	0.028	4	23.20	150	189
DUF3810	Protein of unknown function (DUF3810)	0.00045	9	28.00	152	222
Sec20	Sec20	7.3E-06	15	27.00	152	237
Orf78	Orf78 (ac78)	0.00059	10	28.00	192	237