c2pfam

AT3G56150.1 :

Domain Description Evalue Bits GA Start End
eIF-3c_N Eukaryotic translation initiation factor 3 subunit 8 N-terminus 0 901 20.70 38 636
PH_18 Pleckstrin homology domain 0.00067 9 26.60 58 102
Tctex-1 Tctex-1 family 0.00075 9 20.50 115 155
DNA_ligase_A_N DNA ligase N terminus 0.00097 9 21.10 222 269
DNA_ligase_A_N DNA ligase N terminus 0.03 4 21.10 396 447
ARHGEF5_35 RhoGEF 5/35 N-terminal disordered region 5.5E-07 18 27.00 420 482
PH_18 Pleckstrin homology domain 0.22 1 26.60 482 520
PCI PCI domain 2.4E-23 72 22.50 644 773
ARA70 Nuclear coactivator 0.00028 10 22.10 671 707
DUF2779 Domain of unknown function(DUF2779) 0.00043 10 21.10 710 752
Sigma70_r4 Sigma-70, region 4 8.4E-05 12 22.70 722 751
HTH_Tnp_4 Helix-turn-helix of DDE superfamily endonuclease 3.1E-05 13 27.00 729 753

900

eIF-3c_N
PH_18
Tctex-1
DNA_ligase_A_N
DNA_ligase_A_N
ARHGEF5_35
PH_18
PCI
ARA70
DUF2779
Sigma70_r4
HTH_Tnp_4

References:

HTH_Tnp_4

eIF-3c_N
8995409 Conservation and diversity of eukaryotic translation initiation factor eIF3. J Biol Chem 1997;272:1101-1109.
12411506 Direct eIF2-eIF3 contact in the multifactor complex is important for translation initiation in vivo. EMBO J 2002;21:5886-5898.

DNA_ligase_A_N
9016621 Domain structure of vaccinia DNA ligase. Nucleic Acids Res 1997;25:727-734.

ARHGEF5_35

Tctex-1
2570638 tctex-1: a candidate gene family for a mouse t complex sterility locus. Cell 1989;58:969-979.
10399916 Rhodopsin's carboxy-terminal cytoplasmic tail acts as a membrane receptor for cytoplasmic dynein by binding to the dynein light chain Tctex-1. Cell 1999;97:877-887.

Sigma70_r4
11931761 Structure of the bacterial RNA polymerase promoter specificity sigma subunit. Mol Cell 2002;9:527-539.

PCI
9644972 The PCI domain: a common theme in three multiprotein complexes. Trends Biochem Sci 1998;23:204-205.
9605331 Homologues of 26S proteasome subunits are regulators of transcription and translation. Protein Sci 1998;7:1250-1254.
17761670 Isolation of the Schizosaccharomyces pombe proteasome subunit Rpn7 and a structure-function study of the PCI domain. J Biol Chem. 2007; [Epub ahead of print]

ARA70
10347167 Identification of ARA70 as a ligand-enhanced coactivator for the peroxisome proliferator-activated receptor gamma. J Biol Chem. 1999;274:16147-16152.

PH_18

DUF2779

Domain	Description	Evalue	Bits	GA	Start	End
eIF-3c_N	Eukaryotic translation initiation factor 3 subunit 8 N-terminus	0	901	20.70	38	636
PH_18	Pleckstrin homology domain	0.00067	9	26.60	58	102
Tctex-1	Tctex-1 family	0.00075	9	20.50	115	155
DNA_ligase_A_N	DNA ligase N terminus	0.00097	9	21.10	222	269
DNA_ligase_A_N	DNA ligase N terminus	0.03	4	21.10	396	447
ARHGEF5_35	RhoGEF 5/35 N-terminal disordered region	5.5E-07	18	27.00	420	482
PH_18	Pleckstrin homology domain	0.22	1	26.60	482	520
PCI	PCI domain	2.4E-23	72	22.50	644	773
ARA70	Nuclear coactivator	0.00028	10	22.10	671	707
DUF2779	Domain of unknown function(DUF2779)	0.00043	10	21.10	710	752
Sigma70_r4	Sigma-70, region 4	8.4E-05	12	22.70	722	751
HTH_Tnp_4	Helix-turn-helix of DDE superfamily endonuclease	3.1E-05	13	27.00	729	753