c2pfam

AT3G56550.1 :

Domain Description Evalue Bits GA Start End
PPR_3 Pentatricopeptide repeat domain 0.44 0 25.00 31 49
PPR_2 PPR repeat family 0.00017 11 30.00 71 117
PPR PPR repeat 0.0099 6 25.00 74 98
PPR_long Pentacotripeptide-repeat region of PRORP 0.094 1 27.00 96 130
PPR_3 Pentatricopeptide repeat domain 0.33 0 25.00 104 117
PPR_1 PPR repeat 0.25 0 23.80 105 111
PPR PPR repeat 0.31 1 25.00 108 138
PPR_3 Pentatricopeptide repeat domain 0.0049 6 25.00 141 168
PYRIN PAAD/DAPIN/Pyrin domain 9.7E-05 12 22.90 142 174
PPR_2 PPR repeat family 8.8E-05 12 30.00 142 171
PPR_long Pentacotripeptide-repeat region of PRORP 2.4E-05 13 27.00 144 240
PPR_1 PPR repeat 0.00015 11 23.80 146 168
PPR PPR repeat 1.8E-06 17 25.00 146 171
PPR_1 PPR repeat 0.03 3 23.80 172 199
PPR_2 PPR repeat family 5.4E-11 32 30.00 172 219
PPR PPR repeat 6.9E-09 25 25.00 174 204
PPR_3 Pentatricopeptide repeat domain 0.98 -1 25.00 198 221
PPR_2 PPR repeat family 3.4E-07 20 30.00 242 274
PPR_1 PPR repeat 1.9E-05 14 23.80 247 270
PPR PPR repeat 3.5E-08 23 25.00 247 273
PPR_3 Pentatricopeptide repeat domain 0.0051 6 25.00 247 274
PPR_1 PPR repeat 1.4E-05 14 23.80 272 301
PPR_2 PPR repeat family 1.7E-12 37 30.00 273 319
PPR PPR repeat 1.8E-10 30 25.00 276 305
PPR_long Pentacotripeptide-repeat region of PRORP 0.0055 5 27.00 293 365
PPR_3 Pentatricopeptide repeat domain 4.6E-06 16 25.00 297 356
PPR_1 PPR repeat 0.022 4 23.80 304 335
PPR PPR repeat 0.0058 6 25.00 311 336
PPR_2 PPR repeat family 0.014 5 30.00 315 353
PPR_1 PPR repeat 0.00032 10 23.80 341 366
PPR_2 PPR repeat family 0.098 2 30.00 343 364
PPR PPR repeat 0.00049 10 25.00 348 368
Rep_fac_C Replication factor C 0.00025 11 21.00 416 480
DYW_deaminase DYW family of nucleic acid deaminases 2.6E-38 120 31.60 446 570

581

PPR_3
PPR_2
PPR
PPR_long
PPR_3
PPR_1
PPR
PPR_3
PYRIN
PPR_2
PPR_long
PPR_1
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_2
PPR_1
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_long
PPR_3
PPR_1
PPR
PPR_2
PPR_1
PPR_2
PPR
Rep_fac_C
DYW_deaminase

References:

PYRIN

DYW_deaminase

Rep_fac_C

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
PPR_3	Pentatricopeptide repeat domain	0.44	0	25.00	31	49
PPR_2	PPR repeat family	0.00017	11	30.00	71	117
PPR	PPR repeat	0.0099	6	25.00	74	98
PPR_long	Pentacotripeptide-repeat region of PRORP	0.094	1	27.00	96	130
PPR_3	Pentatricopeptide repeat domain	0.33	0	25.00	104	117
PPR_1	PPR repeat	0.25	0	23.80	105	111
PPR	PPR repeat	0.31	1	25.00	108	138
PPR_3	Pentatricopeptide repeat domain	0.0049	6	25.00	141	168
PYRIN	PAAD/DAPIN/Pyrin domain	9.7E-05	12	22.90	142	174
PPR_2	PPR repeat family	8.8E-05	12	30.00	142	171
PPR_long	Pentacotripeptide-repeat region of PRORP	2.4E-05	13	27.00	144	240
PPR_1	PPR repeat	0.00015	11	23.80	146	168
PPR	PPR repeat	1.8E-06	17	25.00	146	171
PPR_1	PPR repeat	0.03	3	23.80	172	199
PPR_2	PPR repeat family	5.4E-11	32	30.00	172	219
PPR	PPR repeat	6.9E-09	25	25.00	174	204
PPR_3	Pentatricopeptide repeat domain	0.98	-1	25.00	198	221
PPR_2	PPR repeat family	3.4E-07	20	30.00	242	274
PPR_1	PPR repeat	1.9E-05	14	23.80	247	270
PPR	PPR repeat	3.5E-08	23	25.00	247	273
PPR_3	Pentatricopeptide repeat domain	0.0051	6	25.00	247	274
PPR_1	PPR repeat	1.4E-05	14	23.80	272	301
PPR_2	PPR repeat family	1.7E-12	37	30.00	273	319
PPR	PPR repeat	1.8E-10	30	25.00	276	305
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0055	5	27.00	293	365
PPR_3	Pentatricopeptide repeat domain	4.6E-06	16	25.00	297	356
PPR_1	PPR repeat	0.022	4	23.80	304	335
PPR	PPR repeat	0.0058	6	25.00	311	336
PPR_2	PPR repeat family	0.014	5	30.00	315	353
PPR_1	PPR repeat	0.00032	10	23.80	341	366
PPR_2	PPR repeat family	0.098	2	30.00	343	364
PPR	PPR repeat	0.00049	10	25.00	348	368
Rep_fac_C	Replication factor C	0.00025	11	21.00	416	480
DYW_deaminase	DYW family of nucleic acid deaminases	2.6E-38	120	31.60	446	570