c2pfam

AT3G57150.1 :

Domain Description Evalue Bits GA Start End
DKCLD DKCLD (NUC011) domain 9.7E-36 111 20.90 40 97
TruB_N TruB family pseudouridylate synthase (N terminal domain) 1.7E-23 73 22.90 101 217
TruB_C_2 tRNA pseudouridylate synthase B C-terminal domain 4E-25 77 29.30 218 284
DKCLD DKCLD (NUC011) domain 0.07 2 20.90 281 304
PUA PUA domain 7.8E-25 76 20.80 288 360
UPF0113 Uncharacterised protein family (UPF0113) 2.3E-05 14 21.90 291 341
CDC27 DNA polymerase subunit Cdc27 9.3E-05 11 24.40 424 564
SID-1_RNA_chan dsRNA-gated channel SID-1 0.002 5 28.70 463 526

565

DKCLD
TruB_N
TruB_C_2
DKCLD
PUA
UPF0113
CDC27
SID-1_RNA_chan

References:

SID-1_RNA_chan

PUA
10093218 Novel predicted RNA-binding domains associated with the translation machinery. J Mol Evol 1999;48:291-302.

TruB_C_2

TruB_N
7489483 Purification, cloning, and properties of the tRNA psi 55 synthase from Escherichia coli. RNA 1995;1:102-112.
9472021 The box H + ACA snoRNAs carry Cbf5p, the putative rRNA pseudouridine synthase. Genes Dev 1998;12:527-537.

UPF0113

DKCLD
15112237 Insights into the evolution of the nucleolus by an analysis of its protein domain repertoire. Bioessays 2004;26:567-581.

CDC27
15579205 Mapping and mutation of the conserved DNA polymerase interaction motif (DPIM) located in the C-terminal domain of fission yeast DNA polymerase delta subunit Cdc27. BMC Mol Biol. 2004;5:21.

Domain	Description	Evalue	Bits	GA	Start	End
DKCLD	DKCLD (NUC011) domain	9.7E-36	111	20.90	40	97
TruB_N	TruB family pseudouridylate synthase (N terminal domain)	1.7E-23	73	22.90	101	217
TruB_C_2	tRNA pseudouridylate synthase B C-terminal domain	4E-25	77	29.30	218	284
DKCLD	DKCLD (NUC011) domain	0.07	2	20.90	281	304
PUA	PUA domain	7.8E-25	76	20.80	288	360
UPF0113	Uncharacterised protein family (UPF0113)	2.3E-05	14	21.90	291	341
CDC27	DNA polymerase subunit Cdc27	9.3E-05	11	24.40	424	564
SID-1_RNA_chan	dsRNA-gated channel SID-1	0.002	5	28.70	463	526