c2pfam

AT3G57430.1 :

Domain Description Evalue Bits GA Start End
PPR PPR repeat 0.17 2 25.00 68 93
PPR_2 PPR repeat family 5.2E-05 13 30.00 73 108
PPR_3 Pentatricopeptide repeat domain 0.0028 7 25.00 87 123
PPR_long Pentacotripeptide-repeat region of PRORP 0.00074 8 27.00 88 162
PPR_2 PPR repeat family 0.006 6 30.00 133 163
PPR PPR repeat 0.00031 10 25.00 137 162
DYW_deaminase DYW family of nucleic acid deaminases 0.39 0 31.60 138 165
TPR_7 Tetratricopeptide repeat 0.77 0 27.90 139 149
PPR_1 PPR repeat 2.3E-06 17 23.80 162 190
PPR_3 Pentatricopeptide repeat domain 0.043 3 25.00 163 209
PPR_2 PPR repeat family 4E-12 36 30.00 163 210
PPR PPR repeat 2E-09 27 25.00 165 195
PPR_long Pentacotripeptide-repeat region of PRORP 0.74 -2 27.00 181 210
PPR_2 PPR repeat family 0.84 -1 30.00 235 252
PPR PPR repeat 0.13 2 25.00 240 253
PPR_2 PPR repeat family 2.3E-14 43 30.00 266 312
PPR_3 Pentatricopeptide repeat domain 0.0035 7 25.00 266 312
PPR_1 PPR repeat 1E-08 24 23.80 266 294
PPR PPR repeat 3.6E-10 29 25.00 268 298
PPR_long Pentacotripeptide-repeat region of PRORP 0.0065 5 27.00 277 313
PPR PPR repeat 0.0098 6 25.00 342 368
PPR_2 PPR repeat family 0.033 4 30.00 342 369
PPR_1 PPR repeat 0.17 1 23.80 343 364
PPR_2 PPR repeat family 2.7E-06 17 30.00 371 414
PPR PPR repeat 1.1E-06 18 25.00 372 397
PPR_1 PPR repeat 0.24 1 23.80 372 396
PPR_3 Pentatricopeptide repeat domain 0.0014 8 25.00 433 468
PPR_1 PPR repeat 1.9E-05 14 23.80 435 467
PPR_2 PPR repeat family 8.1E-06 15 30.00 442 470
PPR PPR repeat 3E-07 20 25.00 444 470
PPR_2 PPR repeat family 9.3E-09 25 30.00 470 499
PPR_1 PPR repeat 9E-05 12 23.80 470 497
PPR_3 Pentatricopeptide repeat domain 0.07 3 25.00 470 498
PPR PPR repeat 2.8E-08 23 25.00 472 499
PPR_3 Pentatricopeptide repeat domain 0.0056 6 25.00 549 594
PPR PPR repeat 0.00023 11 25.00 556 582
PPR_2 PPR repeat family 2.1E-13 40 30.00 581 628
PPR_1 PPR repeat 7.5E-06 15 23.80 582 609
PPR PPR repeat 3.3E-09 26 25.00 584 614
PPR_long Pentacotripeptide-repeat region of PRORP 1.2E-05 14 27.00 601 680
PPR_3 Pentatricopeptide repeat domain 1.1E-05 15 25.00 605 665
PPR_1 PPR repeat 0.027 4 23.80 613 641
PPR PPR repeat 6.3E-05 13 25.00 619 645
PPR_2 PPR repeat family 0.014 5 30.00 624 654
PPR_1 PPR repeat 3.7E-07 19 23.80 649 680
PPR_2 PPR repeat family 0.0014 8 30.00 657 682
PPR PPR repeat 8.6E-05 12 25.00 657 682
TPR_19 Tetratricopeptide repeat 0.035 4 25.00 666 694
TPR_17 Tetratricopeptide repeat 0.00025 11 24.40 710 740
TPR_19 Tetratricopeptide repeat 0.025 5 25.00 712 742
PPR_long Pentacotripeptide-repeat region of PRORP 0.036 3 27.00 716 755
PPR_3 Pentatricopeptide repeat domain 0.067 3 25.00 717 753
PPR PPR repeat 2E-05 14 25.00 723 752
TPR_7 Tetratricopeptide repeat 0.0011 9 27.90 724 745
PPR_2 PPR repeat family 0.015 5 30.00 729 752
PPR_1 PPR repeat 0.049 3 23.80 733 748
DYW_deaminase DYW family of nucleic acid deaminases 0 143 31.60 756 880
PPR PPR repeat 1 -1 25.00 789 798
PPR_2 PPR repeat family 0.31 1 30.00 790 804

890

PPR
PPR_2
PPR_3
PPR_long
PPR_2
PPR
DYW_deaminase
TPR_7
PPR_1
PPR_3
PPR_2
PPR
PPR_long
PPR_2
PPR
PPR_2
PPR_3
PPR_1
PPR
PPR_long
PPR
PPR_2
PPR_1
PPR_2
PPR
PPR_1
PPR_3
PPR_1
PPR_2
PPR
PPR_2
PPR_1
PPR_3
PPR
PPR_3
PPR
PPR_2
PPR_1
PPR
PPR_long
PPR_3
PPR_1
PPR
PPR_2
PPR_1
PPR_2
PPR
TPR_19
TPR_17
TPR_19
PPR_long
PPR_3
PPR
TPR_7
PPR_2
PPR_1
DYW_deaminase
PPR
PPR_2

References:

TPR_7

TPR_17

TPR_19

DYW_deaminase

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
PPR	PPR repeat	0.17	2	25.00	68	93
PPR_2	PPR repeat family	5.2E-05	13	30.00	73	108
PPR_3	Pentatricopeptide repeat domain	0.0028	7	25.00	87	123
PPR_long	Pentacotripeptide-repeat region of PRORP	0.00074	8	27.00	88	162
PPR_2	PPR repeat family	0.006	6	30.00	133	163
PPR	PPR repeat	0.00031	10	25.00	137	162
DYW_deaminase	DYW family of nucleic acid deaminases	0.39	0	31.60	138	165
TPR_7	Tetratricopeptide repeat	0.77	0	27.90	139	149
PPR_1	PPR repeat	2.3E-06	17	23.80	162	190
PPR_3	Pentatricopeptide repeat domain	0.043	3	25.00	163	209
PPR_2	PPR repeat family	4E-12	36	30.00	163	210
PPR	PPR repeat	2E-09	27	25.00	165	195
PPR_long	Pentacotripeptide-repeat region of PRORP	0.74	-2	27.00	181	210
PPR_2	PPR repeat family	0.84	-1	30.00	235	252
PPR	PPR repeat	0.13	2	25.00	240	253
PPR_2	PPR repeat family	2.3E-14	43	30.00	266	312
PPR_3	Pentatricopeptide repeat domain	0.0035	7	25.00	266	312
PPR_1	PPR repeat	1E-08	24	23.80	266	294
PPR	PPR repeat	3.6E-10	29	25.00	268	298
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0065	5	27.00	277	313
PPR	PPR repeat	0.0098	6	25.00	342	368
PPR_2	PPR repeat family	0.033	4	30.00	342	369
PPR_1	PPR repeat	0.17	1	23.80	343	364
PPR_2	PPR repeat family	2.7E-06	17	30.00	371	414
PPR	PPR repeat	1.1E-06	18	25.00	372	397
PPR_1	PPR repeat	0.24	1	23.80	372	396
PPR_3	Pentatricopeptide repeat domain	0.0014	8	25.00	433	468
PPR_1	PPR repeat	1.9E-05	14	23.80	435	467
PPR_2	PPR repeat family	8.1E-06	15	30.00	442	470
PPR	PPR repeat	3E-07	20	25.00	444	470
PPR_2	PPR repeat family	9.3E-09	25	30.00	470	499
PPR_1	PPR repeat	9E-05	12	23.80	470	497
PPR_3	Pentatricopeptide repeat domain	0.07	3	25.00	470	498
PPR	PPR repeat	2.8E-08	23	25.00	472	499
PPR_3	Pentatricopeptide repeat domain	0.0056	6	25.00	549	594
PPR	PPR repeat	0.00023	11	25.00	556	582
PPR_2	PPR repeat family	2.1E-13	40	30.00	581	628
PPR_1	PPR repeat	7.5E-06	15	23.80	582	609
PPR	PPR repeat	3.3E-09	26	25.00	584	614
PPR_long	Pentacotripeptide-repeat region of PRORP	1.2E-05	14	27.00	601	680
PPR_3	Pentatricopeptide repeat domain	1.1E-05	15	25.00	605	665
PPR_1	PPR repeat	0.027	4	23.80	613	641
PPR	PPR repeat	6.3E-05	13	25.00	619	645
PPR_2	PPR repeat family	0.014	5	30.00	624	654
PPR_1	PPR repeat	3.7E-07	19	23.80	649	680
PPR_2	PPR repeat family	0.0014	8	30.00	657	682
PPR	PPR repeat	8.6E-05	12	25.00	657	682
TPR_19	Tetratricopeptide repeat	0.035	4	25.00	666	694
TPR_17	Tetratricopeptide repeat	0.00025	11	24.40	710	740
TPR_19	Tetratricopeptide repeat	0.025	5	25.00	712	742
PPR_long	Pentacotripeptide-repeat region of PRORP	0.036	3	27.00	716	755
PPR_3	Pentatricopeptide repeat domain	0.067	3	25.00	717	753
PPR	PPR repeat	2E-05	14	25.00	723	752
TPR_7	Tetratricopeptide repeat	0.0011	9	27.90	724	745
PPR_2	PPR repeat family	0.015	5	30.00	729	752
PPR_1	PPR repeat	0.049	3	23.80	733	748
DYW_deaminase	DYW family of nucleic acid deaminases	0	143	31.60	756	880
PPR	PPR repeat	1	-1	25.00	789	798
PPR_2	PPR repeat family	0.31	1	30.00	790	804