c2pfam

AT3G57530.1 :

Domain Description Evalue Bits GA Start End
Kinase-like Kinase-like 0.078 2 25.00 61 113
Pkinase Protein kinase domain 0 257 20.40 63 321
PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase 5.7E-29 91 23.10 64 316
RIO1 RIO1 family 4.9E-05 13 20.40 89 199
APH Phosphotransferase enzyme family 0.17 2 22.40 104 163
Kdo Lipopolysaccharide kinase (Kdo/WaaP) family 9.9E-08 22 20.90 134 209
Kinase-like Kinase-like 1.2E-08 25 25.00 153 309
APH Phosphotransferase enzyme family 0.00043 10 22.40 178 212
EF-hand_7 EF-hand domain pair 0.43 1 30.00 300 317
EF-hand_8 EF-hand domain pair 0.021 5 28.00 353 391
EF-hand_6 EF-hand domain 1.7E-05 15 25.00 369 397
EF-hand_7 EF-hand domain pair 1.6E-10 31 30.00 369 428
EF-hand_1 EF hand 7.4E-06 16 25.40 369 396
EF-hand_5 EF hand 0.0036 7 25.90 371 390
EF-hand_9 EF-hand domain 0.0061 7 37.00 373 427
EF-hand_8 EF-hand domain pair 1.7E-10 31 28.00 381 430
EF-hand_4 Cytoskeletal-regulatory complex EF hand 3E-05 14 21.30 397 428
EF-hand_1 EF hand 1.2E-05 15 25.40 406 428
EF-hand_5 EF hand 0.0016 8 25.90 408 427
VCBS Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella 0.0012 10 26.90 409 421
SPARC_Ca_bdg Secreted protein acidic and rich in cysteine Ca binding region 0.54 1 21.40 410 435
EF-hand_6 EF-hand domain 0.0015 9 25.00 413 428
EF-hand_8 EF-hand domain pair 0.0021 8 28.00 437 462
EF-hand_7 EF-hand domain pair 1.7E-18 57 30.00 439 501
EF-hand_1 EF hand 4.3E-10 29 25.40 441 466
EF-hand_6 EF-hand domain 1.5E-09 27 25.00 441 467
SPARC_Ca_bdg Secreted protein acidic and rich in cysteine Ca binding region 2.2E-07 21 21.40 441 497
EF-hand_5 EF hand 3.5E-07 20 25.90 441 463
EF-hand_9 EF-hand domain 0.0039 8 37.00 444 501
EF-hand_8 EF-hand domain pair 3.1E-12 36 28.00 459 501
EF-hand_4 Cytoskeletal-regulatory complex EF hand 0.00026 11 21.30 471 502
EF-hand_1 EF hand 2.4E-11 33 25.40 476 502
EF-hand_5 EF hand 4E-08 23 25.90 478 500
EF-hand_6 EF-hand domain 4.9E-06 16 25.00 483 502

538

Kinase-like
Pkinase
PK_Tyr_Ser-Thr
RIO1
APH
Kdo
Kinase-like
APH
EF-hand_7
EF-hand_8
EF-hand_6
EF-hand_7
EF-hand_1
EF-hand_5
EF-hand_9
EF-hand_8
EF-hand_4
EF-hand_1
EF-hand_5
VCBS
SPARC_Ca_bdg
EF-hand_6
EF-hand_8
EF-hand_7
EF-hand_1
EF-hand_6
SPARC_Ca_bdg
EF-hand_5
EF-hand_9
EF-hand_8
EF-hand_4
EF-hand_1
EF-hand_5
EF-hand_6

References:

APH
2163618 Cloning of aminoglycoside phosphotransferase (APH) gene from antibiotic- producing strain of Bacillus circulans into a high-expression vector, pKK223-3. Purification, properties and location of the enzyme [published erratum appears in Biochem J 1991 Feb 1 Biochem J 1990;268:671-677.
2167474 PCR cloning of a streptomycin phosphotransferase (aphE) gene from Streptomyces griseus ATCC 12475. Nucleic Acids Res 1990;18:4615-4615.

SPARC_Ca_bdg
16121393 The C-terminal Ca2+-binding domain of SPARC confers anti-spreading activity to human urothelial cells. J Cell Physiol. 2006;206:211-220.

EF-hand_9

EF-hand_8

EF-hand_7

EF-hand_6

EF-hand_5

EF-hand_4

Kinase-like

EF-hand_1

RIO1
12021457 Lipopolysaccharide phosphorylating enzymes encoded in the genomes of Gram-negative bacteria are related to the eukaryotic protein kinases. Protein Sci 2002;11:1580-1584.
12612080 Late cytoplasmic maturation of the small ribosomal subunit requires RIO proteins in Saccharomyces cerevisiae. Mol Cell Biol 2003;23:2083-2095.
12690111 Rio2p: An evolutionarily conserved, low-abundant protein kinase essential for processing of 20S Pre-rRNA in Saccharomyces cerevisiae. 0;0:0-0.
16008568 Structure and activity of the atypical serine kinase Rio1. FEBS J 2005;272:3698-3713.

Pkinase
1956325 Protein kinase catalytic domain sequence database: identification of conserved features of primary structure and classification of family members. Methods Enzymol 1991;200:38-62.
7768349 Protein kinases 6. The eukaryotic protein kinase superfamily: kinase (catalytic) domain structure and classification. FASEB J 1995;9:576-596.
9020587 The protein kinases of budding yeast: six score and more. Trends Biochem Sci 1997;22:18-22.

VCBS

Kdo
11069912 Purification and characterization of WaaP from Escherichia coli, a lipopolysaccharide kinase essential for outer membrane stability. J Biol Chem 2001;276:5498-5504.
12021457 Lipopolysaccharide phosphorylating enzymes encoded in the genomes of Gram-negative bacteria are related to the eukaryotic protein kinases. Protein Sci 2002;11:1580-1584.
10531340 A Haemophilus influenzae gene that encodes a membrane bound 3-deoxy-D-manno-octulosonic acid (Kdo) kinase. Possible involvement of kdo phosphorylation in bacterial virulence. J Biol Chem 1999;274:31391-31400.

PK_Tyr_Ser-Thr

Domain	Description	Evalue	Bits	GA	Start	End
Kinase-like	Kinase-like	0.078	2	25.00	61	113
Pkinase	Protein kinase domain	0	257	20.40	63	321
PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	5.7E-29	91	23.10	64	316
RIO1	RIO1 family	4.9E-05	13	20.40	89	199
APH	Phosphotransferase enzyme family	0.17	2	22.40	104	163
Kdo	Lipopolysaccharide kinase (Kdo/WaaP) family	9.9E-08	22	20.90	134	209
Kinase-like	Kinase-like	1.2E-08	25	25.00	153	309
APH	Phosphotransferase enzyme family	0.00043	10	22.40	178	212
EF-hand_7	EF-hand domain pair	0.43	1	30.00	300	317
EF-hand_8	EF-hand domain pair	0.021	5	28.00	353	391
EF-hand_6	EF-hand domain	1.7E-05	15	25.00	369	397
EF-hand_7	EF-hand domain pair	1.6E-10	31	30.00	369	428
EF-hand_1	EF hand	7.4E-06	16	25.40	369	396
EF-hand_5	EF hand	0.0036	7	25.90	371	390
EF-hand_9	EF-hand domain	0.0061	7	37.00	373	427
EF-hand_8	EF-hand domain pair	1.7E-10	31	28.00	381	430
EF-hand_4	Cytoskeletal-regulatory complex EF hand	3E-05	14	21.30	397	428
EF-hand_1	EF hand	1.2E-05	15	25.40	406	428
EF-hand_5	EF hand	0.0016	8	25.90	408	427
VCBS	Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella	0.0012	10	26.90	409	421
SPARC_Ca_bdg	Secreted protein acidic and rich in cysteine Ca binding region	0.54	1	21.40	410	435
EF-hand_6	EF-hand domain	0.0015	9	25.00	413	428
EF-hand_8	EF-hand domain pair	0.0021	8	28.00	437	462
EF-hand_7	EF-hand domain pair	1.7E-18	57	30.00	439	501
EF-hand_1	EF hand	4.3E-10	29	25.40	441	466
EF-hand_6	EF-hand domain	1.5E-09	27	25.00	441	467
SPARC_Ca_bdg	Secreted protein acidic and rich in cysteine Ca binding region	2.2E-07	21	21.40	441	497
EF-hand_5	EF hand	3.5E-07	20	25.90	441	463
EF-hand_9	EF-hand domain	0.0039	8	37.00	444	501
EF-hand_8	EF-hand domain pair	3.1E-12	36	28.00	459	501
EF-hand_4	Cytoskeletal-regulatory complex EF hand	0.00026	11	21.30	471	502
EF-hand_1	EF hand	2.4E-11	33	25.40	476	502
EF-hand_5	EF hand	4E-08	23	25.90	478	500
EF-hand_6	EF-hand domain	4.9E-06	16	25.00	483	502