c2pfam

AT1G17220.1 :

Domain Description Evalue Bits GA Start End
IF2_N Translation initiation factor IF-2, N-terminal region 3E-08 23 20.60 420 469
MMR_HSR1_Xtn C-terminal region of MMR_HSR1 domain 0.46 0 35.20 454 470
RsgA_GTPase RsgA GTPase 0.015 5 30.00 494 564
SRPRB Signal recognition particle receptor beta subunit 0.00017 11 20.50 502 621
Roc Ras of Complex, Roc, domain of DAPkinase 1.2E-06 18 27.00 504 616
Arf ADP-ribosylation factor family 2E-05 14 20.30 504 662
GTP_EFTU Elongation factor Tu GTP binding domain 2.2E-35 112 20.20 504 664
MMR_HSR1 GTPase of unknown function 1E-11 35 24.50 504 613
Ras Ras family 3.5E-09 26 20.80 505 663
RsgA_GTPase RsgA GTPase 0.00015 11 30.00 573 658
MMR_HSR1_Xtn C-terminal region of MMR_HSR1 domain 0.0012 9 35.20 603 662
IF2_N Translation initiation factor IF-2, N-terminal region 0.99 -1 20.60 620 634
GTP_EFTU_D2 Elongation factor Tu domain 2 0.00047 10 21.20 696 735
IF-2 Translation-initiation factor 2 1.6E-33 105 20.20 807 900
GTP_EFTU_D2 Elongation factor Tu domain 2 5.8E-06 16 21.20 931 998

1026

IF2_N
MMR_HSR1_Xtn
RsgA_GTPase
SRPRB
Roc
Arf
GTP_EFTU
MMR_HSR1
Ras
RsgA_GTPase
MMR_HSR1_Xtn
IF2_N
GTP_EFTU_D2
IF-2
GTP_EFTU_D2

References:

MMR_HSR1
8180467 Structure and evolution of a member of a new subfamily of GTP-binding proteins mapping to the human MHC class I region. Mamm Genome 1994;5:100-105.

GTP_EFTU
9311785 Visualization of elongation factor Tu on the Escherichia coli ribosome. Nature 1997;389:403-406.

SRPRB
7844142 The beta subunit of the signal recognition particle receptor is a transmembrane GTPase that anchors the alpha subunit, a peripheral membrane GTPase, to the endoplasmic reticulum membrane. J Cell Biol. 1995;128:273-282.

MMR_HSR1_Xtn

IF-2
17086204 Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia. Nature. 2006;444:171-178.
10878130 Investigation of the translation-initiation factor IF2 gene, infB, as a tool to study the population structure of Streptococcus agalactiae. Microbiology. 2000;146:1661-1670.
16169924 Living with two extremes: conclusions from the genome sequence of Natronomonas pharaonis. Genome Res. 2005;15:1336-1343.

Ras
11387043 The Rab GTPase family. Genome Biol 2001;2:REVIEWS3007.

RsgA_GTPase

Arf
7990966 Structure of the human ADP-ribosylation factor 1 complexed with GDP. Nature 1994;372:704-708.
7759471 Structure and function of ARF proteins: Activators of cholera toxin and critical components of intracellular vesicular transport processes. J. Biol. Chem. 1995;270:12327-12330.
7770914 Arf proteins: the membrane traffic police? Trends Biochem Sci 1995;20:147-150.
1899243 Human ADP-ribosylation factors. A functionally conserved family of GTP-binding proteins. J Biol Chem 1991;266:2606-2614.

GTP_EFTU_D2
7491491 Crystal structure of the ternary complex of Phe-tRNAPhe, EF-Tu, and a GTP analog. Science 1995;270:1464-1472.

Roc

IF2_N
1764105 Tandem translation of E. coli initiation factor IF2 beta: purification and characterization in vitro of two active forms. Biochem Biophys Res Commun 1991;181:1572-1579.
12600987 A conserved structural motif at the N-terminus of bacterial translation initiation factor IF2. 0;0:0-0.

Domain	Description	Evalue	Bits	GA	Start	End
IF2_N	Translation initiation factor IF-2, N-terminal region	3E-08	23	20.60	420	469
MMR_HSR1_Xtn	C-terminal region of MMR_HSR1 domain	0.46	0	35.20	454	470
RsgA_GTPase	RsgA GTPase	0.015	5	30.00	494	564
SRPRB	Signal recognition particle receptor beta subunit	0.00017	11	20.50	502	621
Roc	Ras of Complex, Roc, domain of DAPkinase	1.2E-06	18	27.00	504	616
Arf	ADP-ribosylation factor family	2E-05	14	20.30	504	662
GTP_EFTU	Elongation factor Tu GTP binding domain	2.2E-35	112	20.20	504	664
MMR_HSR1	GTPase of unknown function	1E-11	35	24.50	504	613
Ras	Ras family	3.5E-09	26	20.80	505	663
RsgA_GTPase	RsgA GTPase	0.00015	11	30.00	573	658
MMR_HSR1_Xtn	C-terminal region of MMR_HSR1 domain	0.0012	9	35.20	603	662
IF2_N	Translation initiation factor IF-2, N-terminal region	0.99	-1	20.60	620	634
GTP_EFTU_D2	Elongation factor Tu domain 2	0.00047	10	21.20	696	735
IF-2	Translation-initiation factor 2	1.6E-33	105	20.20	807	900
GTP_EFTU_D2	Elongation factor Tu domain 2	5.8E-06	16	21.20	931	998