c2pfam

AT3G60080.1 :

Domain Description Evalue Bits GA Start End
MCM_OB MCM OB domain 0.00029 11 24.80 6 62
PHD PHD-finger 0.047 4 27.90 15 27
DZR Double zinc ribbon 0.0041 8 27.30 19 50
zinc_ribbon_9 zinc-ribbon 3.1E-15 47 30.80 19 57
Zn-ribbon_8 Zinc ribbon domain 0.00016 12 34.40 20 51
zf-RING_2 Ring finger domain 0.037 5 27.30 21 50
zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger) 0.25 2 27.00 21 51
zf-RING_5 zinc-RING finger domain 0.35 1 27.90 22 50
zf-ANAPC11 Anaphase-promoting complex subunit 11 RING-H2 finger 0.88 0 21.40 40 53
PHD PHD-finger 0.35 1 27.90 40 50
zf-trcl Probable zinc-ribbon domain 0.024 5 24.00 40 50
Prok-RING_4 Prokaryotic RING finger family 4 0.74 0 27.00 42 50
PHD PHD-finger 0.029 5 27.90 155 174
zinc_ribbon_9 zinc-ribbon 0.097 3 30.80 160 177
zf-trcl Probable zinc-ribbon domain 0.015 6 24.00 164 177
DZR Double zinc ribbon 0.089 3 27.30 168 216
zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger) 7.1E-07 20 27.00 168 212
zf-RING_5 zinc-RING finger domain 7.2E-07 20 27.90 169 210
Zn_ribbon_17 Zinc-ribbon, C4HC2 type 5.8E-06 16 27.30 169 207
Prok-RING_4 Prokaryotic RING finger family 4 6.7E-06 16 27.00 169 213
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 8E-09 26 21.00 169 209
zf-RING_UBOX RING-type zinc-finger 1.6E-08 25 25.20 169 207
zf-RING_2 Ring finger domain 4.5E-14 43 27.30 169 210
zf-RING_11 RING-like zinc finger 1.6E-11 34 27.00 169 196
zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) 3.5E-11 33 27.00 169 209
zf-RING-like RING-like domain 9.5E-06 16 21.60 169 209
zf-rbx1 RING-H2 zinc finger domain 3.3E-09 27 31.00 186 210
zf-ANAPC11 Anaphase-promoting complex subunit 11 RING-H2 finger 7.3E-06 16 21.40 187 213
zf-C3H2C3 Zinc-finger 8.9E-05 13 27.00 187 209
PHD PHD-finger 0.019 5 27.90 187 210
zinc_ribbon_9 zinc-ribbon 0.38 2 30.80 201 210

306

MCM_OB
PHD
DZR
zinc_ribbon_9
Zn-ribbon_8
zf-RING_2
zf-C3HC4_3
zf-RING_5
zf-ANAPC11
PHD
zf-trcl
Prok-RING_4
PHD
zinc_ribbon_9
zf-trcl
DZR
zf-C3HC4_3
zf-RING_5
Zn_ribbon_17
Prok-RING_4
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-RING_11
zf-C3HC4_2
zf-RING-like
zf-rbx1
zf-ANAPC11
zf-C3H2C3
PHD
zinc_ribbon_9

References:

Zn_ribbon_17

Zn-ribbon_8

zf-trcl

DZR

zf-C3HC4
8804826 The RING finger domain: a recent example of a sequence-structure family. Curr Opin Struct Biol 1996;6:395-401.
10500182 RING fingers mediate ubiquitin-conjugating enzyme (E2)-dependent ubiquitination. Proc Natl Acad Sci U S A 1999;96:11364-11369.

zinc_ribbon_9

zf-ANAPC11

zf-C3HC4_2

zf-RING_UBOX

zf-RING_5

zf-RING_2

zf-rbx1

zf-RING-like

zf-RING_11

MCM_OB

zf-C3HC4_3

Prok-RING_4

zf-C3H2C3

PHD
7701562 The PHD finger: implications for chromatin-mediated transcriptional regulation. Trends Biochem Sci 1995;20:56-59.
11124022 Structure of the PHD zinc finger from human williams-beuren syndrome transcription factor J Mol Biol 2000;304:723-729.
17142463 Proteome-wide analysis in S. cerevisiae identifies several PHD fingers as novel direct and selective binding modules of histone H3 methylated at either lysine 4 or lysine 36. J Biol Chem. 2006; [Epub ahead of print]

Domain	Description	Evalue	Bits	GA	Start	End
MCM_OB	MCM OB domain	0.00029	11	24.80	6	62
PHD	PHD-finger	0.047	4	27.90	15	27
DZR	Double zinc ribbon	0.0041	8	27.30	19	50
zinc_ribbon_9	zinc-ribbon	3.1E-15	47	30.80	19	57
Zn-ribbon_8	Zinc ribbon domain	0.00016	12	34.40	20	51
zf-RING_2	Ring finger domain	0.037	5	27.30	21	50
zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	0.25	2	27.00	21	51
zf-RING_5	zinc-RING finger domain	0.35	1	27.90	22	50
zf-ANAPC11	Anaphase-promoting complex subunit 11 RING-H2 finger	0.88	0	21.40	40	53
PHD	PHD-finger	0.35	1	27.90	40	50
zf-trcl	Probable zinc-ribbon domain	0.024	5	24.00	40	50
Prok-RING_4	Prokaryotic RING finger family 4	0.74	0	27.00	42	50
PHD	PHD-finger	0.029	5	27.90	155	174
zinc_ribbon_9	zinc-ribbon	0.097	3	30.80	160	177
zf-trcl	Probable zinc-ribbon domain	0.015	6	24.00	164	177
DZR	Double zinc ribbon	0.089	3	27.30	168	216
zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	7.1E-07	20	27.00	168	212
zf-RING_5	zinc-RING finger domain	7.2E-07	20	27.90	169	210
Zn_ribbon_17	Zinc-ribbon, C4HC2 type	5.8E-06	16	27.30	169	207
Prok-RING_4	Prokaryotic RING finger family 4	6.7E-06	16	27.00	169	213
zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	8E-09	26	21.00	169	209
zf-RING_UBOX	RING-type zinc-finger	1.6E-08	25	25.20	169	207
zf-RING_2	Ring finger domain	4.5E-14	43	27.30	169	210
zf-RING_11	RING-like zinc finger	1.6E-11	34	27.00	169	196
zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	3.5E-11	33	27.00	169	209
zf-RING-like	RING-like domain	9.5E-06	16	21.60	169	209
zf-rbx1	RING-H2 zinc finger domain	3.3E-09	27	31.00	186	210
zf-ANAPC11	Anaphase-promoting complex subunit 11 RING-H2 finger	7.3E-06	16	21.40	187	213
zf-C3H2C3	Zinc-finger	8.9E-05	13	27.00	187	209
PHD	PHD-finger	0.019	5	27.90	187	210
zinc_ribbon_9	zinc-ribbon	0.38	2	30.80	201	210