c2pfam

AT3G60960.1 :

Domain Description Evalue Bits GA Start End
TPR_19 Tetratricopeptide repeat 0.071 4 25.00 56 72
PPR_2 PPR repeat family 1.5E-06 18 30.00 87 113
PPR_3 Pentatricopeptide repeat domain 0.13 2 25.00 88 133
PPR PPR repeat 1.2E-05 15 25.00 90 112
PPR_1 PPR repeat 9.2E-05 12 23.80 92 112
TPR_2 Tetratricopeptide repeat 0.37 1 22.40 101 112
ANAPC3 Anaphase-promoting complex, cyclosome, subunit 3 6.5E-05 13 27.20 102 180
TPR_19 Tetratricopeptide repeat 0.0085 7 25.00 102 152
TPR_7 Tetratricopeptide repeat 0.89 0 27.90 103 111
PPR_2 PPR repeat family 1.4E-07 22 30.00 122 171
PPR_3 Pentatricopeptide repeat domain 0.41 1 25.00 123 171
PPR PPR repeat 0.00017 12 25.00 129 151
PPR_1 PPR repeat 2.1E-05 14 23.80 130 148
TPR_14 Tetratricopeptide repeat 0.12 4 23.50 131 151
RPN7 26S proteasome subunit RPN7 1 -1 25.30 132 151
TPR_7 Tetratricopeptide repeat 5E-05 13 27.90 132 161
TPR_10 Tetratricopeptide repeat 0.014 5 27.50 133 151
TPR_2 Tetratricopeptide repeat 0.012 6 22.40 133 150
TPR_16 Tetratricopeptide repeat 0.0008 10 32.70 134 179
TPR_19 Tetratricopeptide repeat 0.00083 10 25.00 136 179
PPR_2 PPR repeat family 0.023 5 30.00 158 188
TPR_2 Tetratricopeptide repeat 0.061 4 22.40 161 180
TPR_14 Tetratricopeptide repeat 0.029 6 23.50 161 184
PPR PPR repeat 0.033 5 25.00 162 186
PPR_1 PPR repeat 0.43 0 23.80 162 186
TPR_10 Tetratricopeptide repeat 0.065 3 27.50 163 184
PPR_1 PPR repeat 0.012 5 23.80 193 217
PPR_3 Pentatricopeptide repeat domain 0.04 4 25.00 193 218
PPR PPR repeat 0.00017 12 25.00 193 219
PPR_2 PPR repeat family 0.0012 9 30.00 193 218
ANAPC3 Anaphase-promoting complex, cyclosome, subunit 3 0.47 1 27.20 205 235
RPN7 26S proteasome subunit RPN7 0.066 3 25.30 215 262
DUF424 Protein of unknown function (DUF424) 0.0053 7 25.00 221 284
PPR_2 PPR repeat family 0.16 2 30.00 240 260
PPR_3 Pentatricopeptide repeat domain 0.22 2 25.00 243 263
TPR_10 Tetratricopeptide repeat 0.18 2 27.50 243 257
TPR_2 Tetratricopeptide repeat 0.61 1 22.40 243 255
TPR_7 Tetratricopeptide repeat 0.48 1 27.90 244 257
TPR_19 Tetratricopeptide repeat 0.13 3 25.00 245 263
PPR PPR repeat 0.33 2 25.00 245 257
ANAPC3 Anaphase-promoting complex, cyclosome, subunit 3 0.25 2 27.20 245 291
Ribosomal_S7 Ribosomal protein S7p/S5e 0.0067 6 20.10 268 302
PPR PPR repeat 1.3E-05 15 25.00 272 296
PPR_2 PPR repeat family 2E-05 15 30.00 272 295
PPR_3 Pentatricopeptide repeat domain 0.34 1 25.00 272 294
RPN7 26S proteasome subunit RPN7 0.82 -1 25.30 277 300
PPR_1 PPR repeat 0.036 4 23.80 280 294
RPN7 26S proteasome subunit RPN7 0.63 0 25.30 298 350
Ribosomal_S7 Ribosomal protein S7p/S5e 0.0087 6 20.10 313 353
PPR_2 PPR repeat family 1.2E-05 15 30.00 325 348
PPR PPR repeat 2E-06 18 25.00 325 348
PPR_1 PPR repeat 1.1E-06 18 23.80 328 348
TPR_19 Tetratricopeptide repeat 0.00049 11 25.00 334 388
PPR_1 PPR repeat 6.7E-08 22 23.80 361 390
PPR_3 Pentatricopeptide repeat domain 0.0063 7 25.00 361 390
PPR_2 PPR repeat family 1.9E-06 18 30.00 361 393
PPR PPR repeat 2.7E-07 21 25.00 366 392
TPR_14 Tetratricopeptide repeat 0.58 2 23.50 368 388
RPN7 26S proteasome subunit RPN7 0.05 3 25.30 371 392
TPR_7 Tetratricopeptide repeat 0.64 1 27.90 373 386
DUF424 Protein of unknown function (DUF424) 0.15 2 25.00 377 394

403

TPR_19
PPR_2
PPR_3
PPR
PPR_1
TPR_2
ANAPC3
TPR_19
TPR_7
PPR_2
PPR_3
PPR
PPR_1
TPR_14
RPN7
TPR_7
TPR_10
TPR_2
TPR_16
TPR_19
PPR_2
TPR_2
TPR_14
PPR
PPR_1
TPR_10
PPR_1
PPR_3
PPR
PPR_2
ANAPC3
RPN7
DUF424
PPR_2
PPR_3
TPR_10
TPR_2
TPR_7
TPR_19
PPR
ANAPC3
Ribosomal_S7
PPR
PPR_2
PPR_3
RPN7
PPR_1
RPN7
Ribosomal_S7
PPR_2
PPR
PPR_1
TPR_19
PPR_1
PPR_3
PPR_2
PPR
TPR_14
RPN7
TPR_7
DUF424

References:

TPR_7

RPN7
15102831 Rpn7 Is required for the structural integrity of the 26 S proteasome of Saccharomyces cerevisiae. J Biol Chem. 2004;279:27168-27176.

TPR_2
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

TPR_19

TPR_16

PPR_3

PPR_2

PPR_1

Ribosomal_S7
9331418 The structure of ribosomal protein S7 at 1.9 A resolution reveals a beta-hairpin motif that binds double-stranded nucleic acids. Structure 1997;5:1187-1198.

TPR_10

ANAPC3

DUF424

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

TPR_14

Domain	Description	Evalue	Bits	GA	Start	End
TPR_19	Tetratricopeptide repeat	0.071	4	25.00	56	72
PPR_2	PPR repeat family	1.5E-06	18	30.00	87	113
PPR_3	Pentatricopeptide repeat domain	0.13	2	25.00	88	133
PPR	PPR repeat	1.2E-05	15	25.00	90	112
PPR_1	PPR repeat	9.2E-05	12	23.80	92	112
TPR_2	Tetratricopeptide repeat	0.37	1	22.40	101	112
ANAPC3	Anaphase-promoting complex, cyclosome, subunit 3	6.5E-05	13	27.20	102	180
TPR_19	Tetratricopeptide repeat	0.0085	7	25.00	102	152
TPR_7	Tetratricopeptide repeat	0.89	0	27.90	103	111
PPR_2	PPR repeat family	1.4E-07	22	30.00	122	171
PPR_3	Pentatricopeptide repeat domain	0.41	1	25.00	123	171
PPR	PPR repeat	0.00017	12	25.00	129	151
PPR_1	PPR repeat	2.1E-05	14	23.80	130	148
TPR_14	Tetratricopeptide repeat	0.12	4	23.50	131	151
RPN7	26S proteasome subunit RPN7	1	-1	25.30	132	151
TPR_7	Tetratricopeptide repeat	5E-05	13	27.90	132	161
TPR_10	Tetratricopeptide repeat	0.014	5	27.50	133	151
TPR_2	Tetratricopeptide repeat	0.012	6	22.40	133	150
TPR_16	Tetratricopeptide repeat	0.0008	10	32.70	134	179
TPR_19	Tetratricopeptide repeat	0.00083	10	25.00	136	179
PPR_2	PPR repeat family	0.023	5	30.00	158	188
TPR_2	Tetratricopeptide repeat	0.061	4	22.40	161	180
TPR_14	Tetratricopeptide repeat	0.029	6	23.50	161	184
PPR	PPR repeat	0.033	5	25.00	162	186
PPR_1	PPR repeat	0.43	0	23.80	162	186
TPR_10	Tetratricopeptide repeat	0.065	3	27.50	163	184
PPR_1	PPR repeat	0.012	5	23.80	193	217
PPR_3	Pentatricopeptide repeat domain	0.04	4	25.00	193	218
PPR	PPR repeat	0.00017	12	25.00	193	219
PPR_2	PPR repeat family	0.0012	9	30.00	193	218
ANAPC3	Anaphase-promoting complex, cyclosome, subunit 3	0.47	1	27.20	205	235
RPN7	26S proteasome subunit RPN7	0.066	3	25.30	215	262
DUF424	Protein of unknown function (DUF424)	0.0053	7	25.00	221	284
PPR_2	PPR repeat family	0.16	2	30.00	240	260
PPR_3	Pentatricopeptide repeat domain	0.22	2	25.00	243	263
TPR_10	Tetratricopeptide repeat	0.18	2	27.50	243	257
TPR_2	Tetratricopeptide repeat	0.61	1	22.40	243	255
TPR_7	Tetratricopeptide repeat	0.48	1	27.90	244	257
TPR_19	Tetratricopeptide repeat	0.13	3	25.00	245	263
PPR	PPR repeat	0.33	2	25.00	245	257
ANAPC3	Anaphase-promoting complex, cyclosome, subunit 3	0.25	2	27.20	245	291
Ribosomal_S7	Ribosomal protein S7p/S5e	0.0067	6	20.10	268	302
PPR	PPR repeat	1.3E-05	15	25.00	272	296
PPR_2	PPR repeat family	2E-05	15	30.00	272	295
PPR_3	Pentatricopeptide repeat domain	0.34	1	25.00	272	294
RPN7	26S proteasome subunit RPN7	0.82	-1	25.30	277	300
PPR_1	PPR repeat	0.036	4	23.80	280	294
RPN7	26S proteasome subunit RPN7	0.63	0	25.30	298	350
Ribosomal_S7	Ribosomal protein S7p/S5e	0.0087	6	20.10	313	353
PPR_2	PPR repeat family	1.2E-05	15	30.00	325	348
PPR	PPR repeat	2E-06	18	25.00	325	348
PPR_1	PPR repeat	1.1E-06	18	23.80	328	348
TPR_19	Tetratricopeptide repeat	0.00049	11	25.00	334	388
PPR_1	PPR repeat	6.7E-08	22	23.80	361	390
PPR_3	Pentatricopeptide repeat domain	0.0063	7	25.00	361	390
PPR_2	PPR repeat family	1.9E-06	18	30.00	361	393
PPR	PPR repeat	2.7E-07	21	25.00	366	392
TPR_14	Tetratricopeptide repeat	0.58	2	23.50	368	388
RPN7	26S proteasome subunit RPN7	0.05	3	25.30	371	392
TPR_7	Tetratricopeptide repeat	0.64	1	27.90	373	386
DUF424	Protein of unknown function (DUF424)	0.15	2	25.00	377	394