c2pfam

AT3G60980.1 :

Domain Description Evalue Bits GA Start End
TPR_MalT MalT-like TPR region 0.44 -1 27.00 45 97
ATP13 Mitochondrial ATPase expression 0.029 4 26.70 69 114
PPR_2 PPR repeat family 0.0017 8 30.00 72 94
PPR PPR repeat 0.053 4 25.00 75 94
PPR_1 PPR repeat 0.31 1 23.80 76 93
PPR_3 Pentatricopeptide repeat domain 0.38 1 25.00 98 114
PPR_1 PPR repeat 0.0025 7 23.80 101 127
PPR_2 PPR repeat family 0.00025 11 30.00 104 155
TPR_19 Tetratricopeptide repeat 0.018 5 25.00 139 167
PPR PPR repeat 0.054 4 25.00 146 167
TPR_MalT MalT-like TPR region 0.0045 6 27.00 154 204
PPR_1 PPR repeat 0.057 3 23.80 156 168
PPR_1 PPR repeat 0.0011 9 23.80 178 199
PPR_2 PPR repeat family 1.5E-05 15 30.00 178 205
PPR_3 Pentatricopeptide repeat domain 0.0018 8 25.00 178 207
PPR PPR repeat 2.5E-05 14 25.00 181 208
TPR_1 Tetratricopeptide repeat 0.059 3 20.40 182 199
RPN7 26S proteasome subunit RPN7 0.00027 10 25.30 222 257
TPR_MalT MalT-like TPR region 0.25 0 27.00 231 296
PPR_2 PPR repeat family 0.23 2 30.00 236 255
TPR_2 Tetratricopeptide repeat 0.0061 7 22.40 241 258
TPR_11 TPR repeat 0.014 5 26.80 242 256
TPR_1 Tetratricopeptide repeat 0.0011 9 20.40 242 258
TPR_8 Tetratricopeptide repeat 0.021 5 25.70 242 259
RPN7 26S proteasome subunit RPN7 0.034 4 25.30 270 301
PPR_2 PPR repeat family 3.2E-05 14 30.00 271 316
PPR PPR repeat 0.039 4 25.00 271 296
PPR PPR repeat 0.043 4 25.00 311 331
TPR_11 TPR repeat 0.0031 7 26.80 314 332
TPR_2 Tetratricopeptide repeat 0.064 4 22.40 316 332
TPR_8 Tetratricopeptide repeat 0.0046 7 25.70 316 332
TPR_1 Tetratricopeptide repeat 0.13 2 20.40 318 332
TPR_19 Tetratricopeptide repeat 0.41 1 25.00 318 339
RPN7 26S proteasome subunit RPN7 0.86 -1 25.30 318 335
PPR_1 PPR repeat 0.0096 6 23.80 344 361
PPR PPR repeat 0.0046 7 25.00 344 361
PPR_2 PPR repeat family 0.015 5 30.00 344 361
TPR_19 Tetratricopeptide repeat 0.01 6 25.00 357 402
ATP13 Mitochondrial ATPase expression 0.011 5 26.70 367 401
PPR_3 Pentatricopeptide repeat domain 8.9E-05 12 25.00 372 400
PPR_2 PPR repeat family 2.1E-07 21 30.00 373 402
PPR_1 PPR repeat 4.7E-08 23 23.80 373 400
PPR PPR repeat 8.4E-07 19 25.00 376 400
TPR_1 Tetratricopeptide repeat 0.41 1 20.40 376 395
RPN7 26S proteasome subunit RPN7 0.023 4 25.30 377 405
TPR_MalT MalT-like TPR region 0.66 -1 27.00 380 402
TPR_11 TPR repeat 0.26 1 26.80 382 395
TPR_8 Tetratricopeptide repeat 0.35 1 25.70 383 399

412

TPR_MalT
ATP13
PPR_2
PPR
PPR_1
PPR_3
PPR_1
PPR_2
TPR_19
PPR
TPR_MalT
PPR_1
PPR_1
PPR_2
PPR_3
PPR
TPR_1
RPN7
TPR_MalT
PPR_2
TPR_2
TPR_11
TPR_1
TPR_8
RPN7
PPR_2
PPR
PPR
TPR_11
TPR_2
TPR_8
TPR_1
TPR_19
RPN7
PPR_1
PPR
PPR_2
TPR_19
ATP13
PPR_3
PPR_2
PPR_1
PPR
TPR_1
RPN7
TPR_MalT
TPR_11
TPR_8

References:

RPN7
15102831 Rpn7 Is required for the structural integrity of the 26 S proteasome of Saccharomyces cerevisiae. J Biol Chem. 2004;279:27168-27176.

TPR_2
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

TPR_1
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

TPR_19

PPR_3

PPR_2

PPR_1

TPR_11

ATP13

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

TPR_MalT

TPR_8

Domain	Description	Evalue	Bits	GA	Start	End
TPR_MalT	MalT-like TPR region	0.44	-1	27.00	45	97
ATP13	Mitochondrial ATPase expression	0.029	4	26.70	69	114
PPR_2	PPR repeat family	0.0017	8	30.00	72	94
PPR	PPR repeat	0.053	4	25.00	75	94
PPR_1	PPR repeat	0.31	1	23.80	76	93
PPR_3	Pentatricopeptide repeat domain	0.38	1	25.00	98	114
PPR_1	PPR repeat	0.0025	7	23.80	101	127
PPR_2	PPR repeat family	0.00025	11	30.00	104	155
TPR_19	Tetratricopeptide repeat	0.018	5	25.00	139	167
PPR	PPR repeat	0.054	4	25.00	146	167
TPR_MalT	MalT-like TPR region	0.0045	6	27.00	154	204
PPR_1	PPR repeat	0.057	3	23.80	156	168
PPR_1	PPR repeat	0.0011	9	23.80	178	199
PPR_2	PPR repeat family	1.5E-05	15	30.00	178	205
PPR_3	Pentatricopeptide repeat domain	0.0018	8	25.00	178	207
PPR	PPR repeat	2.5E-05	14	25.00	181	208
TPR_1	Tetratricopeptide repeat	0.059	3	20.40	182	199
RPN7	26S proteasome subunit RPN7	0.00027	10	25.30	222	257
TPR_MalT	MalT-like TPR region	0.25	0	27.00	231	296
PPR_2	PPR repeat family	0.23	2	30.00	236	255
TPR_2	Tetratricopeptide repeat	0.0061	7	22.40	241	258
TPR_11	TPR repeat	0.014	5	26.80	242	256
TPR_1	Tetratricopeptide repeat	0.0011	9	20.40	242	258
TPR_8	Tetratricopeptide repeat	0.021	5	25.70	242	259
RPN7	26S proteasome subunit RPN7	0.034	4	25.30	270	301
PPR_2	PPR repeat family	3.2E-05	14	30.00	271	316
PPR	PPR repeat	0.039	4	25.00	271	296
PPR	PPR repeat	0.043	4	25.00	311	331
TPR_11	TPR repeat	0.0031	7	26.80	314	332
TPR_2	Tetratricopeptide repeat	0.064	4	22.40	316	332
TPR_8	Tetratricopeptide repeat	0.0046	7	25.70	316	332
TPR_1	Tetratricopeptide repeat	0.13	2	20.40	318	332
TPR_19	Tetratricopeptide repeat	0.41	1	25.00	318	339
RPN7	26S proteasome subunit RPN7	0.86	-1	25.30	318	335
PPR_1	PPR repeat	0.0096	6	23.80	344	361
PPR	PPR repeat	0.0046	7	25.00	344	361
PPR_2	PPR repeat family	0.015	5	30.00	344	361
TPR_19	Tetratricopeptide repeat	0.01	6	25.00	357	402
ATP13	Mitochondrial ATPase expression	0.011	5	26.70	367	401
PPR_3	Pentatricopeptide repeat domain	8.9E-05	12	25.00	372	400
PPR_2	PPR repeat family	2.1E-07	21	30.00	373	402
PPR_1	PPR repeat	4.7E-08	23	23.80	373	400
PPR	PPR repeat	8.4E-07	19	25.00	376	400
TPR_1	Tetratricopeptide repeat	0.41	1	20.40	376	395
RPN7	26S proteasome subunit RPN7	0.023	4	25.30	377	405
TPR_MalT	MalT-like TPR region	0.66	-1	27.00	380	402
TPR_11	TPR repeat	0.26	1	26.80	382	395
TPR_8	Tetratricopeptide repeat	0.35	1	25.70	383	399