c2pfam

AT3G61170.1 :

Domain Description Evalue Bits GA Start End
PPR PPR repeat 4.7E-06 17 25.00 32 57
PPR_2 PPR repeat family 0.00031 11 30.00 32 57
TPR_14 Tetratricopeptide repeat 0.31 2 23.50 38 55
TPR_12 Tetratricopeptide repeat 0.5 1 30.10 38 52
TPR_10 Tetratricopeptide repeat 0.12 2 27.50 38 53
TPR_19 Tetratricopeptide repeat 0.01 6 25.00 39 58
PPR_1 PPR repeat 1.9E-05 14 23.80 40 54
PPR_1 PPR repeat 1.2E-05 15 23.80 57 83
PPR_2 PPR repeat family 3E-06 17 30.00 58 83
PPR PPR repeat 3E-07 20 25.00 60 83
PPR_3 Pentatricopeptide repeat domain 0.77 0 25.00 60 82
TPR_10 Tetratricopeptide repeat 0.13 2 27.50 68 83
PPR_2 PPR repeat family 1.1E-16 51 30.00 88 135
PPR_3 Pentatricopeptide repeat domain 9E-07 19 25.00 89 135
PPR_1 PPR repeat 3.3E-09 26 23.80 89 116
PPR PPR repeat 1.1E-11 34 25.00 91 121
PPR_long Pentacotripeptide-repeat region of PRORP 0.00012 11 27.00 107 136
PPR_1 PPR repeat 0.58 0 23.80 119 128
PPR_3 Pentatricopeptide repeat domain 0.0011 9 25.00 154 189
PPR_1 PPR repeat 0.0038 7 23.80 155 187
PPR_2 PPR repeat family 0.0009 9 30.00 159 187
PPR PPR repeat 0.00023 11 25.00 164 188
TPR_10 Tetratricopeptide repeat 0.31 1 27.50 169 184
PPR_2 PPR repeat family 3.8E-10 30 30.00 190 238
PPR_1 PPR repeat 0.0017 8 23.80 191 217
PPR_3 Pentatricopeptide repeat domain 0.0038 7 25.00 191 237
PPR PPR repeat 1.8E-09 27 25.00 193 222
PPR_long Pentacotripeptide-repeat region of PRORP 2.3E-05 14 27.00 198 293
PPR_3 Pentatricopeptide repeat domain 0.0091 6 25.00 254 289
Clathrin Region in Clathrin and VPS 0.019 5 23.60 262 319
PPR_1 PPR repeat 0.0046 7 23.80 266 289
PPR PPR repeat 6.5E-05 13 25.00 266 291
PPR_2 PPR repeat family 0.0081 6 30.00 266 288
PPR_2 PPR repeat family 2.1E-11 34 30.00 292 338
PPR_1 PPR repeat 1.4E-05 15 23.80 292 319
PPR_3 Pentatricopeptide repeat domain 0.04 4 25.00 292 322
PPR PPR repeat 1.5E-10 31 25.00 294 323
PPR_long Pentacotripeptide-repeat region of PRORP 0.022 4 27.00 301 368
Clathrin Region in Clathrin and VPS 0.81 -1 23.60 360 378
PPR PPR repeat 2.7E-06 17 25.00 368 394
PPR_2 PPR repeat family 0.00021 11 30.00 368 394
PPR_3 Pentatricopeptide repeat domain 0.19 2 25.00 368 393
PPR_1 PPR repeat 0.00038 10 23.80 368 390
PPR_3 Pentatricopeptide repeat domain 2.5E-05 14 25.00 391 429
PPR_1 PPR repeat 0.00019 11 23.80 392 422
PPR_2 PPR repeat family 5.5E-09 26 30.00 393 431
PPR PPR repeat 1.3E-07 22 25.00 396 426
TPR_14 Tetratricopeptide repeat 0.29 2 23.50 398 418
TPR_12 Tetratricopeptide repeat 0.31 1 30.10 401 418
PPR PPR repeat 0.00011 12 25.00 469 493
PPR_2 PPR repeat family 0.0018 8 30.00 469 494
PPR_1 PPR repeat 0.004 7 23.80 469 492
PPR_3 Pentatricopeptide repeat domain 0.075 3 25.00 469 492
PPR_3 Pentatricopeptide repeat domain 0.00017 12 25.00 495 543
PPR_1 PPR repeat 2.4E-08 24 23.80 495 523
PPR_2 PPR repeat family 3.2E-07 20 30.00 495 539
PPR PPR repeat 2.7E-09 27 25.00 497 523
TPR_12 Tetratricopeptide repeat 0.032 5 30.10 497 536
TPR_14 Tetratricopeptide repeat 0.77 1 23.50 499 521
PPR_long Pentacotripeptide-repeat region of PRORP 0.018 4 27.00 511 582
PPR_1 PPR repeat 0.0056 6 23.80 527 559
TPR_15 Tetratricopeptide repeat 0.00077 9 26.20 532 616
PPR PPR repeat 1.7E-05 15 25.00 535 559
PPR_2 PPR repeat family 0.011 6 30.00 535 559
PPR_3 Pentatricopeptide repeat domain 0.83 0 25.00 559 596
TPR_19 Tetratricopeptide repeat 0.011 6 25.00 585 619
TPR_12 Tetratricopeptide repeat 0.013 6 30.10 587 619
TPR_17 Tetratricopeptide repeat 5.2E-06 17 24.40 588 617
PPR_3 Pentatricopeptide repeat domain 0.49 0 25.00 597 629
TPR_14 Tetratricopeptide repeat 0.77 1 23.50 601 619
TPR_10 Tetratricopeptide repeat 0.0064 6 27.50 603 619
PPR PPR repeat 0.15 3 25.00 603 629
PPR_2 PPR repeat family 0.42 1 30.00 607 629
PPR_1 PPR repeat 0.95 -1 23.80 611 625
DYW_deaminase DYW family of nucleic acid deaminases 1.5E-33 105 31.60 633 737

783

PPR
PPR_2
TPR_14
TPR_12
TPR_10
TPR_19
PPR_1
PPR_1
PPR_2
PPR
PPR_3
TPR_10
PPR_2
PPR_3
PPR_1
PPR
PPR_long
PPR_1
PPR_3
PPR_1
PPR_2
PPR
TPR_10
PPR_2
PPR_1
PPR_3
PPR
PPR_long
PPR_3
Clathrin
PPR_1
PPR
PPR_2
PPR_2
PPR_1
PPR_3
PPR
PPR_long
Clathrin
PPR
PPR_2
PPR_3
PPR_1
PPR_3
PPR_1
PPR_2
PPR
TPR_14
TPR_12
PPR
PPR_2
PPR_1
PPR_3
PPR_3
PPR_1
PPR_2
PPR
TPR_12
TPR_14
PPR_long
PPR_1
TPR_15
PPR
PPR_2
PPR_3
TPR_19
TPR_12
TPR_17
PPR_3
TPR_14
TPR_10
PPR
PPR_2
PPR_1
DYW_deaminase

References:

Clathrin
1547490 Folding and trimerization of clathrin subunits at the triskelion hub. Cell 1992;68:899-910.
3480512 Clathrin heavy chain: molecular cloning and complete primary structure. Proc Natl Acad Sci U S A 1987;84:8805-8809.

TPR_14

TPR_19

TPR_17

PPR_long

PPR_3

PPR_2

PPR_1

TPR_15

TPR_10

DYW_deaminase

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

TPR_12

Domain	Description	Evalue	Bits	GA	Start	End
PPR	PPR repeat	4.7E-06	17	25.00	32	57
PPR_2	PPR repeat family	0.00031	11	30.00	32	57
TPR_14	Tetratricopeptide repeat	0.31	2	23.50	38	55
TPR_12	Tetratricopeptide repeat	0.5	1	30.10	38	52
TPR_10	Tetratricopeptide repeat	0.12	2	27.50	38	53
TPR_19	Tetratricopeptide repeat	0.01	6	25.00	39	58
PPR_1	PPR repeat	1.9E-05	14	23.80	40	54
PPR_1	PPR repeat	1.2E-05	15	23.80	57	83
PPR_2	PPR repeat family	3E-06	17	30.00	58	83
PPR	PPR repeat	3E-07	20	25.00	60	83
PPR_3	Pentatricopeptide repeat domain	0.77	0	25.00	60	82
TPR_10	Tetratricopeptide repeat	0.13	2	27.50	68	83
PPR_2	PPR repeat family	1.1E-16	51	30.00	88	135
PPR_3	Pentatricopeptide repeat domain	9E-07	19	25.00	89	135
PPR_1	PPR repeat	3.3E-09	26	23.80	89	116
PPR	PPR repeat	1.1E-11	34	25.00	91	121
PPR_long	Pentacotripeptide-repeat region of PRORP	0.00012	11	27.00	107	136
PPR_1	PPR repeat	0.58	0	23.80	119	128
PPR_3	Pentatricopeptide repeat domain	0.0011	9	25.00	154	189
PPR_1	PPR repeat	0.0038	7	23.80	155	187
PPR_2	PPR repeat family	0.0009	9	30.00	159	187
PPR	PPR repeat	0.00023	11	25.00	164	188
TPR_10	Tetratricopeptide repeat	0.31	1	27.50	169	184
PPR_2	PPR repeat family	3.8E-10	30	30.00	190	238
PPR_1	PPR repeat	0.0017	8	23.80	191	217
PPR_3	Pentatricopeptide repeat domain	0.0038	7	25.00	191	237
PPR	PPR repeat	1.8E-09	27	25.00	193	222
PPR_long	Pentacotripeptide-repeat region of PRORP	2.3E-05	14	27.00	198	293
PPR_3	Pentatricopeptide repeat domain	0.0091	6	25.00	254	289
Clathrin	Region in Clathrin and VPS	0.019	5	23.60	262	319
PPR_1	PPR repeat	0.0046	7	23.80	266	289
PPR	PPR repeat	6.5E-05	13	25.00	266	291
PPR_2	PPR repeat family	0.0081	6	30.00	266	288
PPR_2	PPR repeat family	2.1E-11	34	30.00	292	338
PPR_1	PPR repeat	1.4E-05	15	23.80	292	319
PPR_3	Pentatricopeptide repeat domain	0.04	4	25.00	292	322
PPR	PPR repeat	1.5E-10	31	25.00	294	323
PPR_long	Pentacotripeptide-repeat region of PRORP	0.022	4	27.00	301	368
Clathrin	Region in Clathrin and VPS	0.81	-1	23.60	360	378
PPR	PPR repeat	2.7E-06	17	25.00	368	394
PPR_2	PPR repeat family	0.00021	11	30.00	368	394
PPR_3	Pentatricopeptide repeat domain	0.19	2	25.00	368	393
PPR_1	PPR repeat	0.00038	10	23.80	368	390
PPR_3	Pentatricopeptide repeat domain	2.5E-05	14	25.00	391	429
PPR_1	PPR repeat	0.00019	11	23.80	392	422
PPR_2	PPR repeat family	5.5E-09	26	30.00	393	431
PPR	PPR repeat	1.3E-07	22	25.00	396	426
TPR_14	Tetratricopeptide repeat	0.29	2	23.50	398	418
TPR_12	Tetratricopeptide repeat	0.31	1	30.10	401	418
PPR	PPR repeat	0.00011	12	25.00	469	493
PPR_2	PPR repeat family	0.0018	8	30.00	469	494
PPR_1	PPR repeat	0.004	7	23.80	469	492
PPR_3	Pentatricopeptide repeat domain	0.075	3	25.00	469	492
PPR_3	Pentatricopeptide repeat domain	0.00017	12	25.00	495	543
PPR_1	PPR repeat	2.4E-08	24	23.80	495	523
PPR_2	PPR repeat family	3.2E-07	20	30.00	495	539
PPR	PPR repeat	2.7E-09	27	25.00	497	523
TPR_12	Tetratricopeptide repeat	0.032	5	30.10	497	536
TPR_14	Tetratricopeptide repeat	0.77	1	23.50	499	521
PPR_long	Pentacotripeptide-repeat region of PRORP	0.018	4	27.00	511	582
PPR_1	PPR repeat	0.0056	6	23.80	527	559
TPR_15	Tetratricopeptide repeat	0.00077	9	26.20	532	616
PPR	PPR repeat	1.7E-05	15	25.00	535	559
PPR_2	PPR repeat family	0.011	6	30.00	535	559
PPR_3	Pentatricopeptide repeat domain	0.83	0	25.00	559	596
TPR_19	Tetratricopeptide repeat	0.011	6	25.00	585	619
TPR_12	Tetratricopeptide repeat	0.013	6	30.10	587	619
TPR_17	Tetratricopeptide repeat	5.2E-06	17	24.40	588	617
PPR_3	Pentatricopeptide repeat domain	0.49	0	25.00	597	629
TPR_14	Tetratricopeptide repeat	0.77	1	23.50	601	619
TPR_10	Tetratricopeptide repeat	0.0064	6	27.50	603	619
PPR	PPR repeat	0.15	3	25.00	603	629
PPR_2	PPR repeat family	0.42	1	30.00	607	629
PPR_1	PPR repeat	0.95	-1	23.80	611	625
DYW_deaminase	DYW family of nucleic acid deaminases	1.5E-33	105	31.60	633	737