c2pfam

AT3G61220.1 :

Domain Description Evalue Bits GA Start End
adh_short short chain dehydrogenase 7.7E-34 106 20.50 8 170
KR KR domain 1.9E-10 31 22.60 10 97
Epimerase NAD dependent epimerase/dehydratase family 3.6E-08 23 20.60 10 101
Polysacc_synt_2 Polysaccharide biosynthesis protein 2E-05 13 20.20 10 79
RmlD_sub_bind RmlD substrate binding domain 5.3E-05 12 19.80 10 78
GDP_Man_Dehyd GDP-mannose 4,6 dehydratase 1.6E-06 17 27.00 11 79
adh_short_C2 Enoyl-(Acyl carrier protein) reductase 5.7E-25 78 27.00 13 168
NAD_binding_10 NAD(P)H-binding 0.00011 12 27.20 13 75
3HCDH_N 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 0.00025 11 20.90 18 78
GDP_Man_Dehyd GDP-mannose 4,6 dehydratase 0.27 0 27.00 124 165
FERM_F2 FERM F2 acyl-CoA binding protein-like domain 0.00016 11 26.00 178 213
DUF762 Coxiella burnetii protein of unknown function (DUF762) 6.5E-05 12 25.00 185 233
GDP_Man_Dehyd GDP-mannose 4,6 dehydratase 0.28 0 27.00 205 247
adh_short_C2 Enoyl-(Acyl carrier protein) reductase 3E-11 33 27.00 215 258
adh_short short chain dehydrogenase 1.9E-10 30 20.50 215 256

296

adh_short
KR
Epimerase
Polysacc_synt_2
RmlD_sub_bind
GDP_Man_Dehyd
adh_short_C2
NAD_binding_10
3HCDH_N
GDP_Man_Dehyd
FERM_F2
DUF762
GDP_Man_Dehyd
adh_short_C2
adh_short

References:

KR

FERM_F2

adh_short
9735295 The refined crystal structure of Drosophila lebanonensis alcohol dehydrogenase at 1.9 A resolution. J Mol Biol 1998;282:383-399.
10387002 Structure of tropinone reductase-II complexed with NADP+ and pseudotropine at 1.9 A resolution: implication for stereospecific substrate binding and catalysis. Biochemistry 1999;38:7630-7637.

GDP_Man_Dehyd

3HCDH_N
3479790 Structure of L-3-hydroxyacyl-coenzyme A dehydrogenase: preliminary chain tracing at 2.8-A resolution. Proc Natl Acad Sci U S A 1987;84:8262-8266.

Epimerase
9174344 Structural analysis of UDP-sugar binding to UDP-galactose 4-epimerase from Escherichia coli. Biochemistry 1997;36:6294-6304.

DUF762
9150226 Plasmid-homologous sequences in the chromosome of plasmidless Coxiella burnetii Scurry Q217. J Bacteriol 1997;179:3293-3297.
12595908 Variation in immune response genes and chronic Q fever. Concepts: preliminary test with post-Q fever fatigue syndrome. Genes Immun 2003;4:82-85.

NAD_binding_10

Polysacc_synt_2
7961465 Sequence analysis and molecular characterization of genes required for the biosynthesis of type 1 capsular polysaccharide in Staphylococcus aureus. J Bacteriol 1994;176:7005-7016.
9079898 Identification of additional genes required for O-antigen biosynthesis in Vibrio cholerae O1. J Bacteriol 1997;179:2147-2153.

adh_short_C2

RmlD_sub_bind
12057193 Variation on a Theme of SDR. dTDP-6-Deoxy-L- lyxo-4-Hexulose Reductase (RmlD) Shows a New Mg(2+)-Dependent Dimerization Mode. Structure (Camb) 2002;10:773-786.
10802738 RmlC, the third enzyme of dTDP-L-rhamnose pathway, is a new class of epimerase. Nat Struct Biol 2000;7:398-402.

Domain	Description	Evalue	Bits	GA	Start	End
adh_short	short chain dehydrogenase	7.7E-34	106	20.50	8	170
KR	KR domain	1.9E-10	31	22.60	10	97
Epimerase	NAD dependent epimerase/dehydratase family	3.6E-08	23	20.60	10	101
Polysacc_synt_2	Polysaccharide biosynthesis protein	2E-05	13	20.20	10	79
RmlD_sub_bind	RmlD substrate binding domain	5.3E-05	12	19.80	10	78
GDP_Man_Dehyd	GDP-mannose 4,6 dehydratase	1.6E-06	17	27.00	11	79
adh_short_C2	Enoyl-(Acyl carrier protein) reductase	5.7E-25	78	27.00	13	168
NAD_binding_10	NAD(P)H-binding	0.00011	12	27.20	13	75
3HCDH_N	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain	0.00025	11	20.90	18	78
GDP_Man_Dehyd	GDP-mannose 4,6 dehydratase	0.27	0	27.00	124	165
FERM_F2	FERM F2 acyl-CoA binding protein-like domain	0.00016	11	26.00	178	213
DUF762	Coxiella burnetii protein of unknown function (DUF762)	6.5E-05	12	25.00	185	233
GDP_Man_Dehyd	GDP-mannose 4,6 dehydratase	0.28	0	27.00	205	247
adh_short_C2	Enoyl-(Acyl carrier protein) reductase	3E-11	33	27.00	215	258
adh_short	short chain dehydrogenase	1.9E-10	30	20.50	215	256