c2pfam

AT3G62250.1 :

Domain Description Evalue Bits GA Start End
Rad60-SLD Ubiquitin-2 like Rad60 SUMO-like 1.2E-19 60 23.70 1 71
Ubiquitin_4 Ubiquitin-like domain 0.0032 7 22.80 1 32
ubiquitin Ubiquitin family 3.4E-37 116 20.70 3 74
Plexin_cytopl Plexin cytoplasmic RasGAP domain 0.0084 4 20.10 8 32
Rad60-SLD_2 Ubiquitin-2 like Rad60 SUMO-like 4.7E-07 19 23.00 11 90
Ubiquitin_2 Ubiquitin-like domain 2.1E-07 21 23.10 12 69
DUF2407 Putative membrane protein (DUF2407) 5.3E-06 17 26.10 13 85
Ubiquitin_5 Ubiquitin-like domain 1.5E-05 15 23.20 14 73
TBK1_ULD TANK binding kinase 1 ubiquitin-like domain 6.6E-06 16 31.00 17 51
Ubiquitin_4 Ubiquitin-like domain 0.0081 6 22.80 43 70
Plexin_cytopl Plexin cytoplasmic RasGAP domain 0.0028 6 20.10 54 95
Ubiquitin_5 Ubiquitin-like domain 0.38 1 23.20 65 87
Ribosomal_S27 Ribosomal protein S27a 5.5E-29 90 21.30 102 147

157

Rad60-SLD
Ubiquitin_4
ubiquitin
Plexin_cytopl
Rad60-SLD_2
Ubiquitin_2
DUF2407
Ubiquitin_5
TBK1_ULD
Ubiquitin_4
Plexin_cytopl
Ubiquitin_5
Ribosomal_S27

References:

Ubiquitin_4

DUF2407

Ubiquitin_5

ubiquitin
3041007 Structure of ubiquitin refined at 1.8 A resolution. J Mol Biol 1987;194:531-544.
8107144 Structure of tetraubiquitin shows how multiubiquitin chains can be formed. J Mol Biol 1994;236:601-609.
9654451 Structure determination of the small ubiquitin-related modifier SUMO-1. J Mol Biol 1998;280:275-286.
9857030 Crystal structure of the human ubiquitin-like protein NEDD8 and interactions with ubiquitin pathway enzymes. J Biol Chem 1998;273:34983-34991.
12826399 A potential proteasome-interacting motif within the ubiquitin-like domain of parkin and other proteins. Trends Biochem Sci 2003;28:280-283.

Plexin_cytopl
15239959 Semaphorin-plexin signaling guides patterning of the developing vasculature. Dev Cell 2004;7:117-123.
11959816 Caenorhabditis elegans PlexinA, PLX-1, interacts with transmembrane semaphorins and regulates epidermal morphogenesis. Development 2002;129:2053-2063.
8570614 A family of transmembrane proteins with homology to the MET-hepatocyte growth factor receptor. Proc Natl Acad Sci U S A 1996;93:674-678.
12559962 Plexin-A1 and plexin-B1 specifically interact at their cytoplasmic domains. Biochem Biophys Res Commun 2003;300:927-931.
11108845 The semaphorin 3A receptor may directly regulate the activity of small GTPases. FEBS Lett. 2000;486:68-72.

TBK1_ULD

Rad60-SLD_2

Ubiquitin_2

Rad60-SLD
15660128 Structures of the SUMO E1 provide mechanistic insights into SUMO activation and E2 recruitment to E1. EMBO J. 2005;24:439-451.
19363481 Molecular mimicry of SUMO promotes DNA repair. Nat Struct Mol Biol. 2009;16:509-516.

Ribosomal_S27
9305777 Characterization and expression of two chicken cDNAs encoding ubiquitin fused to ribosomal proteins of 52 and 80 amino acids. Gene 1997;195:313-319.
2538756 Identification of the long ubiquitin extension as ribosomal protein S27a. Nature 1989;338:438-440.
2538753 The tails of ubiquitin precursors are ribosomal proteins whose fusion to ubiquitin facilitates ribosome biogenesis. Nature 1989;338:394-401.

Domain	Description	Evalue	Bits	GA	Start	End
Rad60-SLD	Ubiquitin-2 like Rad60 SUMO-like	1.2E-19	60	23.70	1	71
Ubiquitin_4	Ubiquitin-like domain	0.0032	7	22.80	1	32
ubiquitin	Ubiquitin family	3.4E-37	116	20.70	3	74
Plexin_cytopl	Plexin cytoplasmic RasGAP domain	0.0084	4	20.10	8	32
Rad60-SLD_2	Ubiquitin-2 like Rad60 SUMO-like	4.7E-07	19	23.00	11	90
Ubiquitin_2	Ubiquitin-like domain	2.1E-07	21	23.10	12	69
DUF2407	Putative membrane protein (DUF2407)	5.3E-06	17	26.10	13	85
Ubiquitin_5	Ubiquitin-like domain	1.5E-05	15	23.20	14	73
TBK1_ULD	TANK binding kinase 1 ubiquitin-like domain	6.6E-06	16	31.00	17	51
Ubiquitin_4	Ubiquitin-like domain	0.0081	6	22.80	43	70
Plexin_cytopl	Plexin cytoplasmic RasGAP domain	0.0028	6	20.10	54	95
Ubiquitin_5	Ubiquitin-like domain	0.38	1	23.20	65	87
Ribosomal_S27	Ribosomal protein S27a	5.5E-29	90	21.30	102	147