c2pfam

AT3G62420.1 :

Domain Description Evalue Bits GA Start End
CtIP_N Tumour-suppressor protein CtIP N-terminal domain 0.00049 10 21.60 21 69
bZIP_2 Basic region leucine zipper 3.6E-10 30 21.30 22 72
MAT1 CDK-activating kinase assembly factor MAT1 0.00096 9 25.00 22 94
DUF4200 Domain of unknown function (DUF4200) 0.0019 9 29.70 24 74
bZIP_Maf bZIP Maf transcription factor 7.6E-05 14 20.70 25 84
bZIP_1 bZIP transcription factor 9.4E-15 45 22.00 25 83
V_ATPase_I V-type ATPase 116kDa subunit family 0.0009 7 26.50 25 96
Shugoshin_N Shugoshin N-terminal coiled-coil region 0.0019 8 30.00 26 69
FapA Flagellar Assembly Protein A 0.00044 9 36.70 26 101
DUF4164 Domain of unknown function (DUF4164) 0.00049 11 27.20 32 100
DUF724 Protein of unknown function (DUF724) 8.8E-05 13 23.40 36 108
RP854 Uncharacterized protein RP854 2.1E-05 15 25.00 39 111
DivIC Septum formation initiator 0.0086 6 24.00 40 78
APG17 Autophagy protein Apg17 3.8E-06 16 25.00 45 114
Sec34 Sec34-like family 3.9E-05 14 25.00 46 109
ZapB Cell division protein ZapB 7.4E-07 20 31.20 46 100
BLOC1_2 Biogenesis of lysosome-related organelles complex-1 subunit 2 2E-05 15 25.00 53 113
CENP-X CENP-S associating Centromere protein X 0.00026 12 25.00 58 113
bZIP_2 Basic region leucine zipper 0.0075 7 21.30 74 94
CtIP_N Tumour-suppressor protein CtIP N-terminal domain 0.014 6 21.60 74 104
DivIC Septum formation initiator 0.00073 10 24.00 74 110
bZIP_1 bZIP transcription factor 0.048 4 22.00 78 102
bZIP_Maf bZIP Maf transcription factor 0.82 1 20.70 80 100
Shugoshin_N Shugoshin N-terminal coiled-coil region 0.45 1 30.00 82 91

146

CtIP_N
bZIP_2
MAT1
DUF4200
bZIP_Maf
bZIP_1
V_ATPase_I
Shugoshin_N
FapA
DUF4164
DUF724
RP854
DivIC
APG17
Sec34
ZapB
BLOC1_2
CENP-X
bZIP_2
CtIP_N
DivIC
bZIP_1
bZIP_Maf
Shugoshin_N

References:

bZIP_1

CENP-X

DivIC
8113187 Characterization of a cell division gene from Bacillus subtilis that is required for vegetative and sporulation septum formation. J Bacteriol 1994;176:1451-1459.

DUF724

DUF4200

DUF4164

CtIP_N
9738006 The C-terminal (BRCT) domains of BRCA1 interact in vivo with CtIP, a protein implicated in the CtBP pathway of transcriptional repression. J Biol Chem. 1998;273:25388-25392.
18007598 A novel plant gene essential for meiosis is related to the human CtIP and the yeast COM1/SAE2 gene. EMBO J. 2007; [Epub ahead of print]
17936710 Ctp1 is a cell-cycle-regulated protein that functions with Mre11 complex to control double-strand break repair by homologous recombination. Mol Cell. 2007;28:134-146.

RP854

V_ATPase_I
10224039 Structure and properties of the vacuolar (H+)-ATPases. J Biol Chem 1999;274:12951-12954.
10340849 Structure and properties of the clathrin-coated vesicle and yeast vacuolar V-ATPases. J Bioenerg Biomembr 1999;31:57-65.

Sec34
11703943 The Sec34/35 Golgi transport complex is related to the exocyst, defining a family of complexes involved in multiple steps of membrane traffic. Dev Cell 2001;1:527-537.

MAT1
11056162 Solution structure of the N-terminal domain of the human TFIIH MAT1 subunit: new insights into the RING finger family. J Biol Chem 2001;276:7457-7464.

FapA

ZapB

Shugoshin_N
14730319 The conserved kinetochore protein shugoshin protects centromeric cohesion during meiosis. Nature 2004;427:510-517.
16687935 Human Shugoshin mediates kinetochore-driven formation of kinetochore microtubules. Cell Cycle. 2006;5:1094-1101.
17322402 Shugoshin enables tension-generating attachment of kinetochores by loading Aurora to centromeres. Genes Dev. 2007;21:420-435.

BLOC1_2
15102850 Identification of snapin and three novel proteins (BLOS1, BLOS2, and BLOS3/reduced pigmentation) as subunits of biogenesis of lysosome-related organelles complex-1 (BLOC-1). J Biol Chem. 2004;279:28393-28401.

APG17

bZIP_Maf
11416124 Phosphorylation of mafa is essential for its transcriptional and biological properties. Mol Cell Biol 2001;21:4441-4452.

bZIP_2
11906833 bZIP transcription factors in Arabidopsis. Trends Plant Sci 2002;7:106-111.
12867624 bZIP proteins of human gammaherpesviruses. J Gen Virol 2003;84:1941-1949.
7780801 Transcription factors 1: bZIP proteins. Protein Profile 1995;2:101-168.

Domain	Description	Evalue	Bits	GA	Start	End
CtIP_N	Tumour-suppressor protein CtIP N-terminal domain	0.00049	10	21.60	21	69
bZIP_2	Basic region leucine zipper	3.6E-10	30	21.30	22	72
MAT1	CDK-activating kinase assembly factor MAT1	0.00096	9	25.00	22	94
DUF4200	Domain of unknown function (DUF4200)	0.0019	9	29.70	24	74
bZIP_Maf	bZIP Maf transcription factor	7.6E-05	14	20.70	25	84
bZIP_1	bZIP transcription factor	9.4E-15	45	22.00	25	83
V_ATPase_I	V-type ATPase 116kDa subunit family	0.0009	7	26.50	25	96
Shugoshin_N	Shugoshin N-terminal coiled-coil region	0.0019	8	30.00	26	69
FapA	Flagellar Assembly Protein A	0.00044	9	36.70	26	101
DUF4164	Domain of unknown function (DUF4164)	0.00049	11	27.20	32	100
DUF724	Protein of unknown function (DUF724)	8.8E-05	13	23.40	36	108
RP854	Uncharacterized protein RP854	2.1E-05	15	25.00	39	111
DivIC	Septum formation initiator	0.0086	6	24.00	40	78
APG17	Autophagy protein Apg17	3.8E-06	16	25.00	45	114
Sec34	Sec34-like family	3.9E-05	14	25.00	46	109
ZapB	Cell division protein ZapB	7.4E-07	20	31.20	46	100
BLOC1_2	Biogenesis of lysosome-related organelles complex-1 subunit 2	2E-05	15	25.00	53	113
CENP-X	CENP-S associating Centromere protein X	0.00026	12	25.00	58	113
bZIP_2	Basic region leucine zipper	0.0075	7	21.30	74	94
CtIP_N	Tumour-suppressor protein CtIP N-terminal domain	0.014	6	21.60	74	104
DivIC	Septum formation initiator	0.00073	10	24.00	74	110
bZIP_1	bZIP transcription factor	0.048	4	22.00	78	102
bZIP_Maf	bZIP Maf transcription factor	0.82	1	20.70	80	100
Shugoshin_N	Shugoshin N-terminal coiled-coil region	0.45	1	30.00	82	91