c2pfam

AT3G62690.1 :

Domain Description Evalue Bits GA Start End
Abhydrolase_9_N Alpha/beta-hydrolase family N-terminus 0.00024 12 27.00 27 74
DUF4381 Domain of unknown function (DUF4381) 2.2E-05 15 27.20 36 84
Zn_ribbon_17 Zinc-ribbon, C4HC2 type 5.3E-08 23 27.30 110 152
zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger) 6.2E-10 30 27.00 111 159
Prok-RING_1 Prokaryotic RING finger family 1 3.1E-06 18 29.10 111 141
FANCL_C FANCL C-terminal domain 3E-05 15 20.70 112 150
zf-RING_2 Ring finger domain 5.9E-18 56 27.30 112 155
zf-RING_11 RING-like zinc finger 2E-14 44 27.00 112 141
zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) 1.2E-12 38 27.00 112 154
zf-RING_5 zinc-RING finger domain 6.2E-11 33 27.90 112 155
zf-RING_4 RING/Ubox like zinc-binding domain 1.4E-05 16 27.00 113 157
PHD PHD-finger 0.0004 11 27.90 113 154
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 4.8E-11 33 21.00 113 154
zf-rbx1 RING-H2 zinc finger domain 2.1E-13 41 31.00 113 155
zf-RING_UBOX RING-type zinc-finger 3.6E-09 27 25.20 113 152
Prok-RING_4 Prokaryotic RING finger family 4 2.1E-07 22 27.00 113 163
zf-RING_6 zf-RING of BARD1-type protein 6.3E-05 14 35.00 113 158
RINGv RING-variant domain 6.7E-05 14 21.60 113 154
Rtf2 Replication termination factor 2 7.4E-05 13 27.40 113 163
zf-ANAPC11 Anaphase-promoting complex subunit 11 RING-H2 finger 2.2E-08 25 21.40 119 157
zf-C3HC4_4 zinc finger of C3HC4-type, RING 0.0005 11 30.00 128 154
zf-RING-like RING-like domain 5.4E-06 17 21.60 131 154
zinc_ribbon_16 Zinc-ribbon like family 0.00088 10 27.00 131 154
zf-C3H2C3 Zinc-finger 0.00066 11 27.00 131 154
Prok-RING_1 Prokaryotic RING finger family 1 0.33 2 29.10 149 159

257

Abhydrolase_9_N
DUF4381
Zn_ribbon_17
zf-C3HC4_3
Prok-RING_1
FANCL_C
zf-RING_2
zf-RING_11
zf-C3HC4_2
zf-RING_5
zf-RING_4
PHD
zf-C3HC4
zf-rbx1
zf-RING_UBOX
Prok-RING_4
zf-RING_6
RINGv
Rtf2
zf-ANAPC11
zf-C3HC4_4
zf-RING-like
zinc_ribbon_16
zf-C3H2C3
Prok-RING_1

References:

FANCL_C
16474167 The WD40 repeats of FANCL are required for Fanconi anemia core complex assembly. J Biol Chem. 2006;281:10896-10905.

Zn_ribbon_17

Prok-RING_4

Abhydrolase_9_N

RINGv

zf-ANAPC11

zf-C3H2C3

zinc_ribbon_16

zf-RING_UBOX

zf-C3HC4
8804826 The RING finger domain: a recent example of a sequence-structure family. Curr Opin Struct Biol 1996;6:395-401.
10500182 RING fingers mediate ubiquitin-conjugating enzyme (E2)-dependent ubiquitination. Proc Natl Acad Sci U S A 1999;96:11364-11369.

zf-RING_6

zf-RING_5

zf-RING_4

zf-RING_2

zf-rbx1

Rtf2
19416828 Schizosaccharomyces pombe Rtf2 mediates site-specific replication termination by inhibiting replication restart. Proc Natl Acad Sci U S A. 2009;106:7927-7932.

zf-RING_11

DUF4381

zf-C3HC4_3

zf-C3HC4_2

zf-RING-like

Prok-RING_1

PHD
7701562 The PHD finger: implications for chromatin-mediated transcriptional regulation. Trends Biochem Sci 1995;20:56-59.
11124022 Structure of the PHD zinc finger from human williams-beuren syndrome transcription factor J Mol Biol 2000;304:723-729.
17142463 Proteome-wide analysis in S. cerevisiae identifies several PHD fingers as novel direct and selective binding modules of histone H3 methylated at either lysine 4 or lysine 36. J Biol Chem. 2006; [Epub ahead of print]

zf-C3HC4_4

Domain	Description	Evalue	Bits	GA	Start	End
Abhydrolase_9_N	Alpha/beta-hydrolase family N-terminus	0.00024	12	27.00	27	74
DUF4381	Domain of unknown function (DUF4381)	2.2E-05	15	27.20	36	84
Zn_ribbon_17	Zinc-ribbon, C4HC2 type	5.3E-08	23	27.30	110	152
zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	6.2E-10	30	27.00	111	159
Prok-RING_1	Prokaryotic RING finger family 1	3.1E-06	18	29.10	111	141
FANCL_C	FANCL C-terminal domain	3E-05	15	20.70	112	150
zf-RING_2	Ring finger domain	5.9E-18	56	27.30	112	155
zf-RING_11	RING-like zinc finger	2E-14	44	27.00	112	141
zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	1.2E-12	38	27.00	112	154
zf-RING_5	zinc-RING finger domain	6.2E-11	33	27.90	112	155
zf-RING_4	RING/Ubox like zinc-binding domain	1.4E-05	16	27.00	113	157
PHD	PHD-finger	0.0004	11	27.90	113	154
zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	4.8E-11	33	21.00	113	154
zf-rbx1	RING-H2 zinc finger domain	2.1E-13	41	31.00	113	155
zf-RING_UBOX	RING-type zinc-finger	3.6E-09	27	25.20	113	152
Prok-RING_4	Prokaryotic RING finger family 4	2.1E-07	22	27.00	113	163
zf-RING_6	zf-RING of BARD1-type protein	6.3E-05	14	35.00	113	158
RINGv	RING-variant domain	6.7E-05	14	21.60	113	154
Rtf2	Replication termination factor 2	7.4E-05	13	27.40	113	163
zf-ANAPC11	Anaphase-promoting complex subunit 11 RING-H2 finger	2.2E-08	25	21.40	119	157
zf-C3HC4_4	zinc finger of C3HC4-type, RING	0.0005	11	30.00	128	154
zf-RING-like	RING-like domain	5.4E-06	17	21.60	131	154
zinc_ribbon_16	Zinc-ribbon like family	0.00088	10	27.00	131	154
zf-C3H2C3	Zinc-finger	0.00066	11	27.00	131	154
Prok-RING_1	Prokaryotic RING finger family 1	0.33	2	29.10	149	159