c2pfam

AT3G62700.1 :

Domain Description Evalue Bits GA Start End
ABC_membrane ABC transporter transmembrane region 2.1E-26 84 22.00 328 592
AAA_25 AAA domain 0.0054 7 27.00 640 687
RsgA_GTPase RsgA GTPase 0.00011 13 30.00 652 699
ABC_tran ABC transporter 1.2E-21 69 23.10 658 790
AAA_23 AAA domain 0.01 7 27.00 658 685
AAA_29 P-loop containing region of AAA domain 0.00049 11 27.00 662 684
AAA_7 P-loop containing dynein motor region 0.042 4 25.80 665 695
AAA_22 AAA domain 0.016 7 27.00 667 690
AAA_30 AAA domain 0.00084 10 27.00 667 709
AAA_16 AAA ATPase domain 0.0043 8 32.60 668 701
SMC_N RecF/RecN/SMC N terminal domain 0.00078 10 40.00 668 692
Zeta_toxin Zeta toxin 0.012 6 20.10 668 700
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.13 3 27.00 669 684
TrwB_AAD_bind Type IV secretion-system coupling protein DNA-binding domain 0.0085 6 19.90 670 695
FtsK_SpoIIIE FtsK/SpoIIIE family 0.057 4 21.20 670 686
MMR_HSR1 GTPase of unknown function 0.00046 11 24.50 670 712
NB-ARC NB-ARC domain 0.0099 6 23.50 670 723
NACHT NACHT domain 0.041 5 20.40 670 690
MeaB Methylmalonyl Co-A mutase-associated GTPase MeaB 0.86 -1 23.10 670 700
Fer4_NifH 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family 0.016 6 20.10 671 731
MobB Molybdopterin guanine dinucleotide synthesis protein B 0.13 3 21.60 671 698
cobW CobW/HypB/UreG, nucleotide-binding domain 0.0033 8 20.70 671 693
Dynamin_N Dynamin family 0.00055 11 21.00 671 698
DUF87 Domain of unknown function DUF87 0.049 5 20.90 671 693
T2SSE Type II/IV secretion system protein 0.11 2 24.90 672 694
NTPase_1 NTPase 0.047 5 23.90 672 838
ATP_bind_1 Conserved hypothetical ATP binding protein 0.056 4 20.20 672 692
AAA_18 AAA domain 0.13 4 29.40 672 692
SMC_N RecF/RecN/SMC N terminal domain 8.9E-05 13 40.00 730 834
SbcCD_C Putative exonuclease SbcCD, C subunit 0.41 2 27.00 753 802
ABC_membrane ABC transporter transmembrane region 5.2E-31 99 22.00 980 1233
ABC_tran ABC transporter 4.7E-32 102 23.10 1314 1462
AAA_29 P-loop containing region of AAA domain 2.9E-05 15 27.00 1318 1350
FtsK_SpoIIIE FtsK/SpoIIIE family 0.00033 11 21.20 1318 1344
DEAD DEAD/DEAH box helicase 0.09 4 20.60 1321 1342
MeaB Methylmalonyl Co-A mutase-associated GTPase MeaB 0.0005 10 23.10 1322 1361
AAA_25 AAA domain 0.11 3 27.00 1322 1343
AAA_7 P-loop containing dynein motor region 0.027 5 25.80 1324 1347
Fer4_NifH 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family 0.032 5 20.10 1326 1361
TrwB_AAD_bind Type IV secretion-system coupling protein DNA-binding domain 0.0069 6 19.90 1326 1357
DUF87 Domain of unknown function DUF87 4.3E-06 18 20.90 1326 1358
MMR_HSR1 GTPase of unknown function 7.3E-05 14 24.50 1326 1346
RsgA_GTPase RsgA GTPase 0.0081 7 30.00 1326 1345
AAA_16 AAA ATPase domain 0.0004 12 32.60 1327 1380
Dynamin_N Dynamin family 0.013 7 21.00 1327 1345
AAA_23 AAA domain 0.0046 8 27.00 1327 1343
MobB Molybdopterin guanine dinucleotide synthesis protein B 0.014 6 21.60 1327 1355
AAA_18 AAA domain 0.015 7 29.40 1327 1347
cobW CobW/HypB/UreG, nucleotide-binding domain 0.024 5 20.70 1327 1346
NTPase_1 NTPase 0.0057 8 23.90 1327 1354
NB-ARC NB-ARC domain 0.0051 7 23.50 1327 1346
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 5.3E-05 14 27.00 1328 1412
SMC_N RecF/RecN/SMC N terminal domain 0.028 5 40.00 1328 1347
AAA_30 AAA domain 0.0015 9 27.00 1329 1356
AAA_22 AAA domain 0.0067 8 27.00 1329 1347
NACHT NACHT domain 0.016 6 20.40 1329 1346
T2SSE Type II/IV secretion system protein 0.0047 7 24.90 1329 1356
Zeta_toxin Zeta toxin 0.022 5 20.10 1329 1358
ATP_bind_1 Conserved hypothetical ATP binding protein 0.0076 7 20.20 1329 1351
DEAD DEAD/DEAH box helicase 0.0039 8 20.60 1401 1478
SMC_N RecF/RecN/SMC N terminal domain 3.7E-05 14 40.00 1433 1505
SbcCD_C Putative exonuclease SbcCD, C subunit 0.007 8 27.00 1451 1474

1539

ABC_membrane
AAA_25
RsgA_GTPase
ABC_tran
AAA_23
AAA_29
AAA_7
AAA_22
AAA_30
AAA_16
SMC_N
Zeta_toxin
AAA_21
TrwB_AAD_bind
FtsK_SpoIIIE
MMR_HSR1
NB-ARC
NACHT
MeaB
Fer4_NifH
MobB
cobW
Dynamin_N
DUF87
T2SSE
NTPase_1
ATP_bind_1
AAA_18
SMC_N
SbcCD_C
ABC_membrane
ABC_tran
AAA_29
FtsK_SpoIIIE
DEAD
MeaB
AAA_25
AAA_7
Fer4_NifH
TrwB_AAD_bind
DUF87
MMR_HSR1
RsgA_GTPase
AAA_16
Dynamin_N
AAA_23
MobB
AAA_18
cobW
NTPase_1
NB-ARC
AAA_21
SMC_N
AAA_30
AAA_22
NACHT
T2SSE
Zeta_toxin
ATP_bind_1
DEAD
SMC_N
SbcCD_C

References:

MMR_HSR1
8180467 Structure and evolution of a member of a new subfamily of GTP-binding proteins mapping to the human MHC class I region. Mamm Genome 1994;5:100-105.

TrwB_AAD_bind
11214325 The bacterial conjugation protein TrwB resembles ring helicases and F1-ATPase. Nature. 2001;409:637-641.
11748238 Conjugative plasmid protein TrwB, an integral membrane type IV secretion system coupling protein. Detailed structural features and mapping of the active site cleft. J Biol Chem. 2002;277:7556-7566.

RsgA_GTPase

SbcCD_C

Zeta_toxin
12571357 Crystal structure of the plasmid maintenance system epsilon/zeta: functional mechanism of toxin zeta and inactivation by epsilon 2 zeta 2 complex formation. Proc Natl Acad Sci U S A 2003;100:1661-1666.

FtsK_SpoIIIE
7592387 A new Escherichia coli cell division gene, ftsK. J Bacteriol 1995;177:6211-6222.
8160014 Bacillus subtilis spoIIIE protein required for DNA segregation during asymmetric cell division. Science 1994;264:572-575.

ATP_bind_1

DEAD
10322435 Unwinding RNA in Saccharomyces cerevisiae: DEAD-box proteins and related families. Trends Biochem Sci 1999;24:192-198.
9862990 The DEAD box RNA helicase family in Arabidopsis thaliana. Nucleic Acids Res 1999;27:628-636.

MeaB

Fer4_NifH

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

NTPase_1

AAA_7

NACHT
10782090 The NACHT family - a new group of predicted NTPases implicated in apoptosis and MHC transcription activation. Trends Biochem Sci 2000;25:223-224.

AAA_30

AAA_29

ABC_membrane

AAA_25

AAA_23

AAA_22

AAA_21

Dynamin_N
8939066 Dynamin GTPase, a force-generating molecular switch. Bioessays 1996;18:885-893.
2144893 Molecular cloning of the microtubule-associated mechanochemical enzyme dynamin reveals homology with a new family of GTP-binding proteins. Nature 1990;347:256-261.

AAA_18

AAA_16

MobB

T2SSE

cobW
9140970 The HypB protein from Bradyrhizobium japonicum can store nickel and is required for the nickel-dependent transcriptional regulation of hydrogenase. Mol Microbiol 1997;24:119-128.
9209019 Characterization of UreG, identification of a UreD-UreF-UreG complex, and evidence suggesting that a nucleotide-binding site in UreG is required for in vivo metallocenter assembly of Klebsiella aerogenes urease. J Bacteriol 1997;179:4081-4086.
8423137 The product of the hypB gene, which is required for nickel incorporation into hydrogenases, is a novel guanine nucleotide-binding protein. J Bacteriol 1993;175:630-635.
1624427 Klebsiella aerogenes urease gene cluster: sequence of ureD and demonstration that four accessory genes (ureD, ureE, ureF, and ureG) are involved in nickel metallocenter biosynthesis. J Bacteriol 1992;174:4324-4330.
1655697 Nucleotide sequence and genetic analysis of a 13.1-kilobase-pair Pseudomonas denitrificans DNA fragment containing five cob genes and identification of structural genes encoding Cob(I)alamin adenosyltransferase, cobyric acid synthase, and bifunctional cob J Bacteriol 1991;173:6074-6087.

NB-ARC
9545207 The NB-ARC domain: a novel signalling motif shared by plant resistance gene products and regulators of cell death in animals. Curr Biol 1998;8:226-227.

SMC_N
10429180 Structural maintenance of chromosomes (SMC) proteins: conserved molecular properties for multiple biological functions. Eur J Biochem 1999;263:6-13.
9640531 SMC protein complexes and higher-order chromosome dynamics. Curr Opin Cell Biol 1998;10:317-322.

DUF87

Domain	Description	Evalue	Bits	GA	Start	End
ABC_membrane	ABC transporter transmembrane region	2.1E-26	84	22.00	328	592
AAA_25	AAA domain	0.0054	7	27.00	640	687
RsgA_GTPase	RsgA GTPase	0.00011	13	30.00	652	699
ABC_tran	ABC transporter	1.2E-21	69	23.10	658	790
AAA_23	AAA domain	0.01	7	27.00	658	685
AAA_29	P-loop containing region of AAA domain	0.00049	11	27.00	662	684
AAA_7	P-loop containing dynein motor region	0.042	4	25.80	665	695
AAA_22	AAA domain	0.016	7	27.00	667	690
AAA_30	AAA domain	0.00084	10	27.00	667	709
AAA_16	AAA ATPase domain	0.0043	8	32.60	668	701
SMC_N	RecF/RecN/SMC N terminal domain	0.00078	10	40.00	668	692
Zeta_toxin	Zeta toxin	0.012	6	20.10	668	700
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.13	3	27.00	669	684
TrwB_AAD_bind	Type IV secretion-system coupling protein DNA-binding domain	0.0085	6	19.90	670	695
FtsK_SpoIIIE	FtsK/SpoIIIE family	0.057	4	21.20	670	686
MMR_HSR1	GTPase of unknown function	0.00046	11	24.50	670	712
NB-ARC	NB-ARC domain	0.0099	6	23.50	670	723
NACHT	NACHT domain	0.041	5	20.40	670	690
MeaB	Methylmalonyl Co-A mutase-associated GTPase MeaB	0.86	-1	23.10	670	700
Fer4_NifH	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	0.016	6	20.10	671	731
MobB	Molybdopterin guanine dinucleotide synthesis protein B	0.13	3	21.60	671	698
cobW	CobW/HypB/UreG, nucleotide-binding domain	0.0033	8	20.70	671	693
Dynamin_N	Dynamin family	0.00055	11	21.00	671	698
DUF87	Domain of unknown function DUF87	0.049	5	20.90	671	693
T2SSE	Type II/IV secretion system protein	0.11	2	24.90	672	694
NTPase_1	NTPase	0.047	5	23.90	672	838
ATP_bind_1	Conserved hypothetical ATP binding protein	0.056	4	20.20	672	692
AAA_18	AAA domain	0.13	4	29.40	672	692
SMC_N	RecF/RecN/SMC N terminal domain	8.9E-05	13	40.00	730	834
SbcCD_C	Putative exonuclease SbcCD, C subunit	0.41	2	27.00	753	802
ABC_membrane	ABC transporter transmembrane region	5.2E-31	99	22.00	980	1233
ABC_tran	ABC transporter	4.7E-32	102	23.10	1314	1462
AAA_29	P-loop containing region of AAA domain	2.9E-05	15	27.00	1318	1350
FtsK_SpoIIIE	FtsK/SpoIIIE family	0.00033	11	21.20	1318	1344
DEAD	DEAD/DEAH box helicase	0.09	4	20.60	1321	1342
MeaB	Methylmalonyl Co-A mutase-associated GTPase MeaB	0.0005	10	23.10	1322	1361
AAA_25	AAA domain	0.11	3	27.00	1322	1343
AAA_7	P-loop containing dynein motor region	0.027	5	25.80	1324	1347
Fer4_NifH	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	0.032	5	20.10	1326	1361
TrwB_AAD_bind	Type IV secretion-system coupling protein DNA-binding domain	0.0069	6	19.90	1326	1357
DUF87	Domain of unknown function DUF87	4.3E-06	18	20.90	1326	1358
MMR_HSR1	GTPase of unknown function	7.3E-05	14	24.50	1326	1346
RsgA_GTPase	RsgA GTPase	0.0081	7	30.00	1326	1345
AAA_16	AAA ATPase domain	0.0004	12	32.60	1327	1380
Dynamin_N	Dynamin family	0.013	7	21.00	1327	1345
AAA_23	AAA domain	0.0046	8	27.00	1327	1343
MobB	Molybdopterin guanine dinucleotide synthesis protein B	0.014	6	21.60	1327	1355
AAA_18	AAA domain	0.015	7	29.40	1327	1347
cobW	CobW/HypB/UreG, nucleotide-binding domain	0.024	5	20.70	1327	1346
NTPase_1	NTPase	0.0057	8	23.90	1327	1354
NB-ARC	NB-ARC domain	0.0051	7	23.50	1327	1346
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	5.3E-05	14	27.00	1328	1412
SMC_N	RecF/RecN/SMC N terminal domain	0.028	5	40.00	1328	1347
AAA_30	AAA domain	0.0015	9	27.00	1329	1356
AAA_22	AAA domain	0.0067	8	27.00	1329	1347
NACHT	NACHT domain	0.016	6	20.40	1329	1346
T2SSE	Type II/IV secretion system protein	0.0047	7	24.90	1329	1356
Zeta_toxin	Zeta toxin	0.022	5	20.10	1329	1358
ATP_bind_1	Conserved hypothetical ATP binding protein	0.0076	7	20.20	1329	1351
DEAD	DEAD/DEAH box helicase	0.0039	8	20.60	1401	1478
SMC_N	RecF/RecN/SMC N terminal domain	3.7E-05	14	40.00	1433	1505
SbcCD_C	Putative exonuclease SbcCD, C subunit	0.007	8	27.00	1451	1474