c2pfam

AT3G62970.1 :

Domain Description Evalue Bits GA Start End
zf-CHY CHY zinc finger 5.2E-24 74 22.10 35 115
zf-RING_2 Ring finger domain 0.43 0 27.30 38 60
zinc_ribbon_6 Zinc-ribbon 0.81 -1 27.00 78 95
zf-WRNIP1_ubi Werner helicase-interacting protein 1 ubiquitin-binding domain 0.11 3 26.40 82 90
zf-RING_4 RING/Ubox like zinc-binding domain 0.91 -1 27.00 84 101
zf-RING_UBOX RING-type zinc-finger 0.73 -1 25.20 85 92
zf-RING_4 RING/Ubox like zinc-binding domain 1 -1 27.00 159 174
zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) 0.009 5 27.00 160 173
Rad50_zn_hook Rad50 zinc hook motif 0.0045 6 21.60 164 173
zf-RING_2 Ring finger domain 1.3E-11 34 27.30 168 212
zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) 9.7E-11 31 27.00 170 212
zf-RING_UBOX RING-type zinc-finger 5.1E-10 29 25.20 170 210
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 8E-09 25 21.00 170 212
zf-RING_4 RING/Ubox like zinc-binding domain 4.6E-07 19 27.00 170 214
zf-WRNIP1_ubi Werner helicase-interacting protein 1 ubiquitin-binding domain 0.066 4 26.40 170 175
Rad50_zn_hook Rad50 zinc hook motif 0.0066 6 21.60 201 216
zf-WRNIP1_ubi Werner helicase-interacting protein 1 ubiquitin-binding domain 0.019 5 26.40 206 216
zinc_ribbon_6 Zinc-ribbon 5E-27 83 27.00 217 274

287

zf-CHY
zf-RING_2
zinc_ribbon_6
zf-WRNIP1_ubi
zf-RING_4
zf-RING_UBOX
zf-RING_4
zf-C3HC4_2
Rad50_zn_hook
zf-RING_2
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4
zf-RING_4
zf-WRNIP1_ubi
Rad50_zn_hook
zf-WRNIP1_ubi
zinc_ribbon_6

References:

zinc_ribbon_6

zf-C3HC4_2

zf-RING_UBOX

zf-C3HC4
8804826 The RING finger domain: a recent example of a sequence-structure family. Curr Opin Struct Biol 1996;6:395-401.
10500182 RING fingers mediate ubiquitin-conjugating enzyme (E2)-dependent ubiquitination. Proc Natl Acad Sci U S A 1999;96:11364-11369.

zf-WRNIP1_ubi

zf-RING_4

zf-RING_2

zf-CHY
15294910 The role of Hot13p and redox chemistry in the mitochondrial TIM22 import pathway. J Biol Chem 2004;279:43744-43751.

Rad50_zn_hook
12152085 The Rad50 zinc-hook is a structure joining Mre11 complexes in DNA recombination and repair. Nature 2002;418:562-566.
12151226 Tethering on the brink: the evolutionarily conserved Mre11-Rad50 complex. Trends Biochem Sci 2002;27:410-418.

Domain	Description	Evalue	Bits	GA	Start	End
zf-CHY	CHY zinc finger	5.2E-24	74	22.10	35	115
zf-RING_2	Ring finger domain	0.43	0	27.30	38	60
zinc_ribbon_6	Zinc-ribbon	0.81	-1	27.00	78	95
zf-WRNIP1_ubi	Werner helicase-interacting protein 1 ubiquitin-binding domain	0.11	3	26.40	82	90
zf-RING_4	RING/Ubox like zinc-binding domain	0.91	-1	27.00	84	101
zf-RING_UBOX	RING-type zinc-finger	0.73	-1	25.20	85	92
zf-RING_4	RING/Ubox like zinc-binding domain	1	-1	27.00	159	174
zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	0.009	5	27.00	160	173
Rad50_zn_hook	Rad50 zinc hook motif	0.0045	6	21.60	164	173
zf-RING_2	Ring finger domain	1.3E-11	34	27.30	168	212
zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	9.7E-11	31	27.00	170	212
zf-RING_UBOX	RING-type zinc-finger	5.1E-10	29	25.20	170	210
zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	8E-09	25	21.00	170	212
zf-RING_4	RING/Ubox like zinc-binding domain	4.6E-07	19	27.00	170	214
zf-WRNIP1_ubi	Werner helicase-interacting protein 1 ubiquitin-binding domain	0.066	4	26.40	170	175
Rad50_zn_hook	Rad50 zinc hook motif	0.0066	6	21.60	201	216
zf-WRNIP1_ubi	Werner helicase-interacting protein 1 ubiquitin-binding domain	0.019	5	26.40	206	216
zinc_ribbon_6	Zinc-ribbon	5E-27	83	27.00	217	274