c2pfam

AT3G63370.1 :

Domain Description Evalue Bits GA Start End
PPR_1 PPR repeat 2.6E-06 17 23.80 122 142
PPR PPR repeat 6.3E-06 16 25.00 124 144
PPR_2 PPR repeat family 0.0015 8 30.00 125 145
PPR_3 Pentatricopeptide repeat domain 0.68 -1 25.00 128 142
PPR_2 PPR repeat family 3.2E-09 26 30.00 147 194
PPR_1 PPR repeat 0.063 3 23.80 147 170
PPR PPR repeat 3.8E-08 23 25.00 149 178
TPR_14 Tetratricopeptide repeat 0.21 2 23.50 149 170
PPR_3 Pentatricopeptide repeat domain 0.023 4 25.00 150 193
PPR_long Pentacotripeptide-repeat region of PRORP 0.0033 6 27.00 164 243
PPR PPR repeat 0.085 3 25.00 187 212
Clathrin Region in Clathrin and VPS 0.023 4 23.60 203 243
PPR PPR repeat 2.4E-05 14 25.00 220 247
PPR_2 PPR repeat family 0.0012 9 30.00 220 247
PPR_1 PPR repeat 0.026 4 23.80 221 241
PPR_3 Pentatricopeptide repeat domain 0.24 1 25.00 221 247
TPR_14 Tetratricopeptide repeat 0.38 1 23.50 222 243
PPR_3 Pentatricopeptide repeat domain 0.032 4 25.00 248 286
PPR_1 PPR repeat 0.0013 8 23.80 248 275
PPR_2 PPR repeat family 8E-10 28 30.00 248 294
PPR PPR repeat 9E-07 18 25.00 250 276
PPR_3 Pentatricopeptide repeat domain 3.5E-05 13 25.00 320 364
Clathrin Region in Clathrin and VPS 0.035 3 23.60 322 352
PPR PPR repeat 6.7E-06 16 25.00 322 347
PPR_2 PPR repeat family 8.2E-05 12 30.00 322 347
PPR_1 PPR repeat 0.0018 7 23.80 324 346
PPR_1 PPR repeat 1.1E-07 21 23.80 350 377
PPR_2 PPR repeat family 3.2E-13 39 30.00 350 394
PPR_3 Pentatricopeptide repeat domain 0.001 9 25.00 350 377
PPR PPR repeat 3.2E-11 32 25.00 352 381
Vps39_1 Vacuolar sorting protein 39 domain 1 0.01 6 21.40 353 386
PPR_long Pentacotripeptide-repeat region of PRORP 0.023 3 27.00 363 393
PPR_3 Pentatricopeptide repeat domain 0.42 0 25.00 374 431
PPR PPR repeat 0.15 2 25.00 425 435
PPR_1 PPR repeat 0.93 -1 23.80 425 434
PPR_2 PPR repeat family 5.8E-06 16 30.00 450 487
PPR_1 PPR repeat 0.014 5 23.80 451 476
PPR_3 Pentatricopeptide repeat domain 0.38 0 25.00 451 483
PPR PPR repeat 1E-07 21 25.00 453 480
Vps39_1 Vacuolar sorting protein 39 domain 1 0.0041 7 21.40 455 482
PPR_2 PPR repeat family 0.11 2 30.00 520 548
PPR_3 Pentatricopeptide repeat domain 0.44 0 25.00 521 550
PPR PPR repeat 0.011 6 25.00 527 551
PPR_2 PPR repeat family 1.1E-07 21 30.00 550 590
PPR_1 PPR repeat 1.8E-06 17 23.80 551 579
PPR_3 Pentatricopeptide repeat domain 6.1E-05 13 25.00 551 583
PPR PPR repeat 4.6E-09 26 25.00 553 582
TPR_14 Tetratricopeptide repeat 0.047 4 23.50 565 586
PPR_long Pentacotripeptide-repeat region of PRORP 3E-06 16 27.00 567 705
PPR_1 PPR repeat 0.36 0 23.80 616 628
PPR_3 Pentatricopeptide repeat domain 0.041 3 25.00 626 653
PPR PPR repeat 9.3E-05 12 25.00 627 653
PPR_2 PPR repeat family 0.26 1 30.00 628 653
PPR_1 PPR repeat 0.082 2 23.80 629 648
TPR_14 Tetratricopeptide repeat 0.74 1 23.50 630 651
PPR_3 Pentatricopeptide repeat domain 1.5E-07 21 25.00 654 698
PPR_1 PPR repeat 0.00013 11 23.80 656 680
PPR_2 PPR repeat family 1.7E-10 30 30.00 656 698
PPR PPR repeat 1.4E-09 27 25.00 656 683
PPR_long Pentacotripeptide-repeat region of PRORP 0.0001 11 27.00 670 706
PPR_1 PPR repeat 0.11 2 23.80 683 715
PPR PPR repeat 0.0011 9 25.00 690 715
PPR PPR repeat 0.00018 11 25.00 726 752
PPR_1 PPR repeat 0.0028 7 23.80 727 751
PPR_2 PPR repeat family 0.12 2 30.00 728 752
PPR PPR repeat 0.04 4 25.00 798 820
PPR_2 PPR repeat family 0.24 1 30.00 799 821
DYW_deaminase DYW family of nucleic acid deaminases 0 167 31.60 825 950

960

PPR_1
PPR
PPR_2
PPR_3
PPR_2
PPR_1
PPR
TPR_14
PPR_3
PPR_long
PPR
Clathrin
PPR
PPR_2
PPR_1
PPR_3
TPR_14
PPR_3
PPR_1
PPR_2
PPR
PPR_3
Clathrin
PPR
PPR_2
PPR_1
PPR_1
PPR_2
PPR_3
PPR
Vps39_1
PPR_long
PPR_3
PPR
PPR_1
PPR_2
PPR_1
PPR_3
PPR
Vps39_1
PPR_2
PPR_3
PPR
PPR_2
PPR_1
PPR_3
PPR
TPR_14
PPR_long
PPR_1
PPR_3
PPR
PPR_2
PPR_1
TPR_14
PPR_3
PPR_1
PPR_2
PPR
PPR_long
PPR_1
PPR
PPR
PPR_1
PPR_2
PPR
PPR_2
DYW_deaminase

References:

Clathrin
1547490 Folding and trimerization of clathrin subunits at the triskelion hub. Cell 1992;68:899-910.
3480512 Clathrin heavy chain: molecular cloning and complete primary structure. Proc Natl Acad Sci U S A 1987;84:8805-8809.

DYW_deaminase

Vps39_1
11062257 New component of the vacuolar class C-Vps complex couples nucleotide exchange on the Ypt7 GTPase to SNARE-dependent docking and fusion. J Cell Biol. 2000;151:551-562.
9111041 Vam2/Vps41p and Vam6/Vps39p are components of a protein complex on the vacuolar membranes and involved in the vacuolar assembly in the yeast Saccharomyces cerevisiae. J Biol Chem. 1997;272:11344-11349.
1493335 Morphological classification of the yeast vacuolar protein sorting mutants: evidence for a prevacuolar compartment in class E vps mutants. Mol Biol Cell. 1992;3:1389-1402.

TPR_14

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
PPR_1	PPR repeat	2.6E-06	17	23.80	122	142
PPR	PPR repeat	6.3E-06	16	25.00	124	144
PPR_2	PPR repeat family	0.0015	8	30.00	125	145
PPR_3	Pentatricopeptide repeat domain	0.68	-1	25.00	128	142
PPR_2	PPR repeat family	3.2E-09	26	30.00	147	194
PPR_1	PPR repeat	0.063	3	23.80	147	170
PPR	PPR repeat	3.8E-08	23	25.00	149	178
TPR_14	Tetratricopeptide repeat	0.21	2	23.50	149	170
PPR_3	Pentatricopeptide repeat domain	0.023	4	25.00	150	193
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0033	6	27.00	164	243
PPR	PPR repeat	0.085	3	25.00	187	212
Clathrin	Region in Clathrin and VPS	0.023	4	23.60	203	243
PPR	PPR repeat	2.4E-05	14	25.00	220	247
PPR_2	PPR repeat family	0.0012	9	30.00	220	247
PPR_1	PPR repeat	0.026	4	23.80	221	241
PPR_3	Pentatricopeptide repeat domain	0.24	1	25.00	221	247
TPR_14	Tetratricopeptide repeat	0.38	1	23.50	222	243
PPR_3	Pentatricopeptide repeat domain	0.032	4	25.00	248	286
PPR_1	PPR repeat	0.0013	8	23.80	248	275
PPR_2	PPR repeat family	8E-10	28	30.00	248	294
PPR	PPR repeat	9E-07	18	25.00	250	276
PPR_3	Pentatricopeptide repeat domain	3.5E-05	13	25.00	320	364
Clathrin	Region in Clathrin and VPS	0.035	3	23.60	322	352
PPR	PPR repeat	6.7E-06	16	25.00	322	347
PPR_2	PPR repeat family	8.2E-05	12	30.00	322	347
PPR_1	PPR repeat	0.0018	7	23.80	324	346
PPR_1	PPR repeat	1.1E-07	21	23.80	350	377
PPR_2	PPR repeat family	3.2E-13	39	30.00	350	394
PPR_3	Pentatricopeptide repeat domain	0.001	9	25.00	350	377
PPR	PPR repeat	3.2E-11	32	25.00	352	381
Vps39_1	Vacuolar sorting protein 39 domain 1	0.01	6	21.40	353	386
PPR_long	Pentacotripeptide-repeat region of PRORP	0.023	3	27.00	363	393
PPR_3	Pentatricopeptide repeat domain	0.42	0	25.00	374	431
PPR	PPR repeat	0.15	2	25.00	425	435
PPR_1	PPR repeat	0.93	-1	23.80	425	434
PPR_2	PPR repeat family	5.8E-06	16	30.00	450	487
PPR_1	PPR repeat	0.014	5	23.80	451	476
PPR_3	Pentatricopeptide repeat domain	0.38	0	25.00	451	483
PPR	PPR repeat	1E-07	21	25.00	453	480
Vps39_1	Vacuolar sorting protein 39 domain 1	0.0041	7	21.40	455	482
PPR_2	PPR repeat family	0.11	2	30.00	520	548
PPR_3	Pentatricopeptide repeat domain	0.44	0	25.00	521	550
PPR	PPR repeat	0.011	6	25.00	527	551
PPR_2	PPR repeat family	1.1E-07	21	30.00	550	590
PPR_1	PPR repeat	1.8E-06	17	23.80	551	579
PPR_3	Pentatricopeptide repeat domain	6.1E-05	13	25.00	551	583
PPR	PPR repeat	4.6E-09	26	25.00	553	582
TPR_14	Tetratricopeptide repeat	0.047	4	23.50	565	586
PPR_long	Pentacotripeptide-repeat region of PRORP	3E-06	16	27.00	567	705
PPR_1	PPR repeat	0.36	0	23.80	616	628
PPR_3	Pentatricopeptide repeat domain	0.041	3	25.00	626	653
PPR	PPR repeat	9.3E-05	12	25.00	627	653
PPR_2	PPR repeat family	0.26	1	30.00	628	653
PPR_1	PPR repeat	0.082	2	23.80	629	648
TPR_14	Tetratricopeptide repeat	0.74	1	23.50	630	651
PPR_3	Pentatricopeptide repeat domain	1.5E-07	21	25.00	654	698
PPR_1	PPR repeat	0.00013	11	23.80	656	680
PPR_2	PPR repeat family	1.7E-10	30	30.00	656	698
PPR	PPR repeat	1.4E-09	27	25.00	656	683
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0001	11	27.00	670	706
PPR_1	PPR repeat	0.11	2	23.80	683	715
PPR	PPR repeat	0.0011	9	25.00	690	715
PPR	PPR repeat	0.00018	11	25.00	726	752
PPR_1	PPR repeat	0.0028	7	23.80	727	751
PPR_2	PPR repeat family	0.12	2	30.00	728	752
PPR	PPR repeat	0.04	4	25.00	798	820
PPR_2	PPR repeat family	0.24	1	30.00	799	821
DYW_deaminase	DYW family of nucleic acid deaminases	0	167	31.60	825	950