c2pfam

AT4G00335.1 :

Domain Description Evalue Bits GA Start End
zf-Nse Zinc-finger of the MIZ type in Nse subunit 2.7E-07 21 20.70 129 179
zf-RING_4 RING/Ubox like zinc-binding domain 0.015 5 27.00 132 147
Rad50_zn_hook Rad50 zinc hook motif 0.0032 8 21.60 133 142
zf-rbx1 RING-H2 zinc finger domain 6.7E-13 39 31.00 134 179
zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger) 2E-06 18 27.00 135 183
zf-P11 P-11 zinc finger 0.24 2 24.90 135 143
zf-ANAPC11 Anaphase-promoting complex subunit 11 RING-H2 finger 1.2E-09 28 21.40 136 185
FANCL_C FANCL C-terminal domain 0.0002 12 20.70 137 172
Prok-RING_4 Prokaryotic RING finger family 4 0.15 2 27.00 137 146
zf-RING_2 Ring finger domain 5.3E-13 40 27.30 138 179
Prok-RING_4 Prokaryotic RING finger family 4 0.0051 7 27.00 139 184
zf-RING_5 zinc-RING finger domain 1.4E-08 25 27.90 139 181
zf-RING_11 RING-like zinc finger 3E-08 24 27.00 139 166
zf-RING_4 RING/Ubox like zinc-binding domain 5.8E-05 13 27.00 139 181
zf-C3HC4_4 zinc finger of C3HC4-type, RING 3.8E-06 17 30.00 139 179
RINGv RING-variant domain 1.3E-05 16 21.60 139 179
zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) 3.1E-12 37 27.00 139 179
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 1.7E-11 34 21.00 139 179
zf-RING_UBOX RING-type zinc-finger 1.8E-10 31 25.20 139 177
Zn_ribbon_17 Zinc-ribbon, C4HC2 type 0.0001 12 27.30 153 177
zf-P11 P-11 zinc finger 0.00023 11 24.90 155 181
Rad50_zn_hook Rad50 zinc hook motif 0.024 5 21.60 172 182
zf-RING_UBOX RING-type zinc-finger 0.4 1 25.20 176 180

190

zf-Nse
zf-RING_4
Rad50_zn_hook
zf-rbx1
zf-C3HC4_3
zf-P11
zf-ANAPC11
FANCL_C
Prok-RING_4
zf-RING_2
Prok-RING_4
zf-RING_5
zf-RING_11
zf-RING_4
zf-C3HC4_4
RINGv
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
Zn_ribbon_17
zf-P11
Rad50_zn_hook
zf-RING_UBOX

References:

FANCL_C
16474167 The WD40 repeats of FANCL are required for Fanconi anemia core complex assembly. J Biol Chem. 2006;281:10896-10905.

RINGv

zf-RING_UBOX

zf-C3HC4
8804826 The RING finger domain: a recent example of a sequence-structure family. Curr Opin Struct Biol 1996;6:395-401.
10500182 RING fingers mediate ubiquitin-conjugating enzyme (E2)-dependent ubiquitination. Proc Natl Acad Sci U S A 1999;96:11364-11369.

Zn_ribbon_17

zf-ANAPC11

zf-C3HC4_2

Rad50_zn_hook
12152085 The Rad50 zinc-hook is a structure joining Mre11 complexes in DNA recombination and repair. Nature 2002;418:562-566.
12151226 Tethering on the brink: the evolutionarily conserved Mre11-Rad50 complex. Trends Biochem Sci 2002;27:410-418.

zf-RING_5

zf-RING_4

zf-RING_2

zf-rbx1

zf-RING_11

zf-C3HC4_4

zf-C3HC4_3

Prok-RING_4

zf-P11

zf-Nse
12966087 Novel essential DNA repair proteins Nse1 and Nse2 are subunits of the fission yeast Smc5-Smc6 complex. J Biol Chem 2003;278:45460-45467.

Domain	Description	Evalue	Bits	GA	Start	End
zf-Nse	Zinc-finger of the MIZ type in Nse subunit	2.7E-07	21	20.70	129	179
zf-RING_4	RING/Ubox like zinc-binding domain	0.015	5	27.00	132	147
Rad50_zn_hook	Rad50 zinc hook motif	0.0032	8	21.60	133	142
zf-rbx1	RING-H2 zinc finger domain	6.7E-13	39	31.00	134	179
zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	2E-06	18	27.00	135	183
zf-P11	P-11 zinc finger	0.24	2	24.90	135	143
zf-ANAPC11	Anaphase-promoting complex subunit 11 RING-H2 finger	1.2E-09	28	21.40	136	185
FANCL_C	FANCL C-terminal domain	0.0002	12	20.70	137	172
Prok-RING_4	Prokaryotic RING finger family 4	0.15	2	27.00	137	146
zf-RING_2	Ring finger domain	5.3E-13	40	27.30	138	179
Prok-RING_4	Prokaryotic RING finger family 4	0.0051	7	27.00	139	184
zf-RING_5	zinc-RING finger domain	1.4E-08	25	27.90	139	181
zf-RING_11	RING-like zinc finger	3E-08	24	27.00	139	166
zf-RING_4	RING/Ubox like zinc-binding domain	5.8E-05	13	27.00	139	181
zf-C3HC4_4	zinc finger of C3HC4-type, RING	3.8E-06	17	30.00	139	179
RINGv	RING-variant domain	1.3E-05	16	21.60	139	179
zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	3.1E-12	37	27.00	139	179
zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	1.7E-11	34	21.00	139	179
zf-RING_UBOX	RING-type zinc-finger	1.8E-10	31	25.20	139	177
Zn_ribbon_17	Zinc-ribbon, C4HC2 type	0.0001	12	27.30	153	177
zf-P11	P-11 zinc finger	0.00023	11	24.90	155	181
Rad50_zn_hook	Rad50 zinc hook motif	0.024	5	21.60	172	182
zf-RING_UBOX	RING-type zinc-finger	0.4	1	25.20	176	180