c2pfam

AT4G02640.1 :

Domain Description Evalue Bits GA Start End
Macoilin Transmembrane protein 0.0012 8 32.00 56 293
DUF812 Protein of unknown function (DUF812) 9.6E-05 12 30.00 143 297
Spc7 Spc7 kinetochore protein 0.00077 9 34.00 197 297
HAUS-augmin3 HAUS augmin-like complex subunit 3 6.6E-05 13 27.80 198 297
ATG16 Autophagy protein 16 (ATG16) 4.3E-06 18 35.00 200 308
TPR_MLP1_2 TPR/MLP1/MLP2-like protein 0.0067 7 30.00 200 263
DUF4200 Domain of unknown function (DUF4200) 0.00083 10 29.70 202 264
V_ATPase_I V-type ATPase 116kDa subunit family 0.0031 6 26.50 204 298
bZIP_Maf bZIP Maf transcription factor 1.7E-09 29 20.70 214 274
bZIP_1 bZIP transcription factor 2.8E-17 53 22.00 215 269
GAS Growth-arrest specific micro-tubule binding 0.0013 9 32.30 215 271
bZIP_2 Basic region leucine zipper 1.9E-10 31 21.30 217 265
DHR10 Designed helical repeat protein 10 domain 0.00024 12 28.40 222 271
DUF3450 Protein of unknown function (DUF3450) 0.00022 11 26.90 226 300
UPF0242 Uncharacterised protein family (UPF0242) 0.00013 13 23.70 227 259
Cauli_AT Aphid transmission protein 0.00026 11 21.10 230 301
DUF2730 Protein of unknown function (DUF2730) 0.00073 10 23.80 237 269
KASH_CCD Coiled-coil region of CCDC155 or KASH 1.9E-05 15 38.60 239 297
YabA Initiation control protein YabA 0.0002 13 30.00 241 296
FlaC_arch Flagella accessory protein C (FlaC) 0.073 4 22.00 241 265
TPR_MLP1_2 TPR/MLP1/MLP2-like protein 0.0016 9 30.00 253 297
FlaC_arch Flagella accessory protein C (FlaC) 0.021 6 22.00 278 300
DUF2730 Protein of unknown function (DUF2730) 0.16 3 23.80 278 307
bZIP_2 Basic region leucine zipper 0.19 2 21.30 278 293
bZIP_C Basic leucine-zipper C terminal 2.4E-14 45 22.70 284 345

411

Macoilin
DUF812
Spc7
HAUS-augmin3
ATG16
TPR_MLP1_2
DUF4200
V_ATPase_I
bZIP_Maf
bZIP_1
GAS
bZIP_2
DHR10
DUF3450
UPF0242
Cauli_AT
DUF2730
KASH_CCD
YabA
FlaC_arch
TPR_MLP1_2
FlaC_arch
DUF2730
bZIP_2
bZIP_C

References:

bZIP_1

TPR_MLP1_2
9024684 Identification of protein p270/Tpr as a constitutive component of the nuclear pore complex-attached intranuclear filaments. J Cell Biol 1997;136:515-529.
7798308 Tpr, a large coiled coil protein whose amino terminus is involved in activation of oncogenic kinases, is localized to the cytoplasmic surface of the nuclear pore complex. J Cell Biol 1994;127:1515-1526.
10617624 Mlp2p, a component of nuclear pore attached intranuclear filaments, associates with nic96p. J Biol Chem 2000;275:343-350.
12490156 Myosin-like proteins 1 and 2 are not required for silencing or telomere anchoring, but act in the Tel1 pathway of telomere length control. J Struct Biol 2002;140:79-91.

DUF812

Cauli_AT
10601029 Aphid transmission of cauliflower mosaic virus requires the viral PIII protein. EMBO J 1999;18:7077-7085.
6311674 Aphid transmission and a polypeptide are specified by a defined region of the cauliflower mosaic virus genome. Gene 1983;23:15-23.

bZIP_C
9049271 Characterization of a novel rice bZIP protein which binds to the alpha-globulin promoter. Plant Mol Biol. 1997;33:513-522.

HAUS-augmin3

KASH_CCD

Macoilin
17341690 An improved method for the analysis of membrane proteins by mass spectrometry. Physiol Genomics. 2007; [Epub ahead of print]

UPF0242

DUF4200

FlaC_arch
11250034 The archaeal flagellum: a different kind of prokaryotic motility structure. FEMS Microbiol Rev 2001;25:147-174.
11717274 Characterization of flagellum gene families of methanogenic archaea and localization of novel flagellum accessory proteins. J Bacteriol 2001;183:7154-7164.

GAS

V_ATPase_I
10224039 Structure and properties of the vacuolar (H+)-ATPases. J Biol Chem 1999;274:12951-12954.
10340849 Structure and properties of the clathrin-coated vesicle and yeast vacuolar V-ATPases. J Bioenerg Biomembr 1999;31:57-65.

ATG16
10406794 Apg16p is required for the function of the Apg12p-Apg5p conjugate in the yeast autophagy pathway. EMBO J. 1999;18:3888-3896.
17012802 Expression, purification and crystallization of the Atg5-Atg16 complex essential for autophagy. Acta Crystallograph Sect F Struct Biol Cryst Commun. 2006;62:1021-1023.

DUF3450

YabA

DUF2730

DHR10

bZIP_Maf
11416124 Phosphorylation of mafa is essential for its transcriptional and biological properties. Mol Cell Biol 2001;21:4441-4452.

Spc7
15371542 The fission yeast kinetochore component Spc7 associates with the EB1 family member Mal3 and is required for kinetochore-spindle association. Mol Biol Cell 2004;15:5255-5267.

bZIP_2
11906833 bZIP transcription factors in Arabidopsis. Trends Plant Sci 2002;7:106-111.
12867624 bZIP proteins of human gammaherpesviruses. J Gen Virol 2003;84:1941-1949.
7780801 Transcription factors 1: bZIP proteins. Protein Profile 1995;2:101-168.

Domain	Description	Evalue	Bits	GA	Start	End
Macoilin	Transmembrane protein	0.0012	8	32.00	56	293
DUF812	Protein of unknown function (DUF812)	9.6E-05	12	30.00	143	297
Spc7	Spc7 kinetochore protein	0.00077	9	34.00	197	297
HAUS-augmin3	HAUS augmin-like complex subunit 3	6.6E-05	13	27.80	198	297
ATG16	Autophagy protein 16 (ATG16)	4.3E-06	18	35.00	200	308
TPR_MLP1_2	TPR/MLP1/MLP2-like protein	0.0067	7	30.00	200	263
DUF4200	Domain of unknown function (DUF4200)	0.00083	10	29.70	202	264
V_ATPase_I	V-type ATPase 116kDa subunit family	0.0031	6	26.50	204	298
bZIP_Maf	bZIP Maf transcription factor	1.7E-09	29	20.70	214	274
bZIP_1	bZIP transcription factor	2.8E-17	53	22.00	215	269
GAS	Growth-arrest specific micro-tubule binding	0.0013	9	32.30	215	271
bZIP_2	Basic region leucine zipper	1.9E-10	31	21.30	217	265
DHR10	Designed helical repeat protein 10 domain	0.00024	12	28.40	222	271
DUF3450	Protein of unknown function (DUF3450)	0.00022	11	26.90	226	300
UPF0242	Uncharacterised protein family (UPF0242)	0.00013	13	23.70	227	259
Cauli_AT	Aphid transmission protein	0.00026	11	21.10	230	301
DUF2730	Protein of unknown function (DUF2730)	0.00073	10	23.80	237	269
KASH_CCD	Coiled-coil region of CCDC155 or KASH	1.9E-05	15	38.60	239	297
YabA	Initiation control protein YabA	0.0002	13	30.00	241	296
FlaC_arch	Flagella accessory protein C (FlaC)	0.073	4	22.00	241	265
TPR_MLP1_2	TPR/MLP1/MLP2-like protein	0.0016	9	30.00	253	297
FlaC_arch	Flagella accessory protein C (FlaC)	0.021	6	22.00	278	300
DUF2730	Protein of unknown function (DUF2730)	0.16	3	23.80	278	307
bZIP_2	Basic region leucine zipper	0.19	2	21.30	278	293
bZIP_C	Basic leucine-zipper C terminal	2.4E-14	45	22.70	284	345