c2pfam

AT4G04370.1 :

Domain Description Evalue Bits GA Start End
PPR_long Pentacotripeptide-repeat region of PRORP 2.4E-05 13 27.00 11 145
PPR_2 PPR repeat family 1.8E-09 27 30.00 13 57
PPR PPR repeat 0.022 5 25.00 15 40
PPR_3 Pentatricopeptide repeat domain 0.0003 10 25.00 18 56
PPR_1 PPR repeat 0.15 1 23.80 42 54
PPR_3 Pentatricopeptide repeat domain 0.0025 7 25.00 70 110
RNPP_C RNPP family C-terminal domain 0.0091 5 26.50 76 107
PPR_1 PPR repeat 5.9E-05 12 23.80 85 108
PPR PPR repeat 1.8E-07 20 25.00 85 111
PPR_2 PPR repeat family 0.00068 9 30.00 86 112
PPR_2 PPR repeat family 5E-11 32 30.00 110 156
PPR_1 PPR repeat 3.9E-07 19 23.80 110 139
PPR_3 Pentatricopeptide repeat domain 0.0027 7 25.00 111 147
PPR PPR repeat 2.2E-08 23 25.00 113 143
PPR_3 Pentatricopeptide repeat domain 0.19 1 25.00 171 207
RNPP_C RNPP family C-terminal domain 0.17 0 26.50 176 205
PPR_2 PPR repeat family 1.5E-08 24 30.00 178 208
PPR PPR repeat 1.9E-08 24 25.00 182 209
PPR_1 PPR repeat 6.4E-07 18 23.80 183 206
PPR_long Pentacotripeptide-repeat region of PRORP 8.2E-05 11 27.00 197 306
PPR_3 Pentatricopeptide repeat domain 1.7E-07 21 25.00 207 256
PPR_1 PPR repeat 1.2E-05 14 23.80 209 236
PPR_2 PPR repeat family 1.7E-11 33 30.00 209 248
PPR PPR repeat 4.8E-11 32 25.00 211 241
RNPP_C RNPP family C-terminal domain 0.074 2 26.50 254 305
PPR_3 Pentatricopeptide repeat domain 0.0074 6 25.00 271 306
TPR_15 Tetratricopeptide repeat 9.1E-05 11 26.20 277 338
PPR PPR repeat 0.033 4 25.00 284 305
PPR_2 PPR repeat family 0.33 1 30.00 284 302
PPR_2 PPR repeat family 8.5E-10 28 30.00 309 343
PPR_3 Pentatricopeptide repeat domain 0.027 4 25.00 310 340
PPR_1 PPR repeat 7.3E-06 15 23.80 310 337
PPR PPR repeat 4.2E-10 29 25.00 312 341
PPR_long Pentacotripeptide-repeat region of PRORP 0.0062 5 27.00 327 411
PPR_1 PPR repeat 3.1E-05 13 23.80 376 407
PPR_3 Pentatricopeptide repeat domain 0.0026 7 25.00 376 410
PPR_2 PPR repeat family 3.6E-05 13 30.00 381 411
ATP13 Mitochondrial ATPase expression 0.67 -1 26.70 383 407
RNPP_C RNPP family C-terminal domain 0.014 4 26.50 383 410
PPR PPR repeat 1.4E-07 21 25.00 385 411
PPR_1 PPR repeat 1.2E-06 17 23.80 410 439
PPR_3 Pentatricopeptide repeat domain 0.00038 10 25.00 411 443
PPR_2 PPR repeat family 8.2E-12 34 30.00 411 459
PPR PPR repeat 1.4E-07 21 25.00 413 439
ATP13 Mitochondrial ATPase expression 0.92 -1 26.70 417 436
PPR_long Pentacotripeptide-repeat region of PRORP 0.0063 5 27.00 423 463
PPR PPR repeat 0.00032 10 25.00 487 509
PPR_2 PPR repeat family 0.055 3 30.00 487 507
PPR_1 PPR repeat 0.078 2 23.80 487 507
PPR_2 PPR repeat family 1.4E-07 21 30.00 512 549
PPR_1 PPR repeat 0.0032 6 23.80 513 537
PPR_3 Pentatricopeptide repeat domain 0.00037 10 25.00 513 560
PPR PPR repeat 1.5E-06 18 25.00 515 544
ATP13 Mitochondrial ATPase expression 0.00014 11 26.70 517 580
PPR_long Pentacotripeptide-repeat region of PRORP 3.7E-05 12 27.00 533 609
PPR_1 PPR repeat 0.017 4 23.80 544 576
PPR_2 PPR repeat family 1.3E-06 18 30.00 547 584
PPR PPR repeat 1.9E-05 14 25.00 550 577
PPR_1 PPR repeat 2.8E-06 16 23.80 580 610
PPR PPR repeat 0.0016 8 25.00 591 610
PPR_2 PPR repeat family 0.0015 8 30.00 591 610
PPR_3 Pentatricopeptide repeat domain 0.27 1 25.00 599 627
ATP13 Mitochondrial ATPase expression 0.72 -1 26.70 603 631
PPR PPR repeat 0.17 2 25.00 659 682

729

PPR_long
PPR_2
PPR
PPR_3
PPR_1
PPR_3
RNPP_C
PPR_1
PPR
PPR_2
PPR_2
PPR_1
PPR_3
PPR
PPR_3
RNPP_C
PPR_2
PPR
PPR_1
PPR_long
PPR_3
PPR_1
PPR_2
PPR
RNPP_C
PPR_3
TPR_15
PPR
PPR_2
PPR_2
PPR_3
PPR_1
PPR
PPR_long
PPR_1
PPR_3
PPR_2
ATP13
RNPP_C
PPR
PPR_1
PPR_3
PPR_2
PPR
ATP13
PPR_long
PPR
PPR_2
PPR_1
PPR_2
PPR_1
PPR_3
PPR
ATP13
PPR_long
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR_2
PPR_3
ATP13
PPR

References:

RNPP_C

ATP13

TPR_15

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
PPR_long	Pentacotripeptide-repeat region of PRORP	2.4E-05	13	27.00	11	145
PPR_2	PPR repeat family	1.8E-09	27	30.00	13	57
PPR	PPR repeat	0.022	5	25.00	15	40
PPR_3	Pentatricopeptide repeat domain	0.0003	10	25.00	18	56
PPR_1	PPR repeat	0.15	1	23.80	42	54
PPR_3	Pentatricopeptide repeat domain	0.0025	7	25.00	70	110
RNPP_C	RNPP family C-terminal domain	0.0091	5	26.50	76	107
PPR_1	PPR repeat	5.9E-05	12	23.80	85	108
PPR	PPR repeat	1.8E-07	20	25.00	85	111
PPR_2	PPR repeat family	0.00068	9	30.00	86	112
PPR_2	PPR repeat family	5E-11	32	30.00	110	156
PPR_1	PPR repeat	3.9E-07	19	23.80	110	139
PPR_3	Pentatricopeptide repeat domain	0.0027	7	25.00	111	147
PPR	PPR repeat	2.2E-08	23	25.00	113	143
PPR_3	Pentatricopeptide repeat domain	0.19	1	25.00	171	207
RNPP_C	RNPP family C-terminal domain	0.17	0	26.50	176	205
PPR_2	PPR repeat family	1.5E-08	24	30.00	178	208
PPR	PPR repeat	1.9E-08	24	25.00	182	209
PPR_1	PPR repeat	6.4E-07	18	23.80	183	206
PPR_long	Pentacotripeptide-repeat region of PRORP	8.2E-05	11	27.00	197	306
PPR_3	Pentatricopeptide repeat domain	1.7E-07	21	25.00	207	256
PPR_1	PPR repeat	1.2E-05	14	23.80	209	236
PPR_2	PPR repeat family	1.7E-11	33	30.00	209	248
PPR	PPR repeat	4.8E-11	32	25.00	211	241
RNPP_C	RNPP family C-terminal domain	0.074	2	26.50	254	305
PPR_3	Pentatricopeptide repeat domain	0.0074	6	25.00	271	306
TPR_15	Tetratricopeptide repeat	9.1E-05	11	26.20	277	338
PPR	PPR repeat	0.033	4	25.00	284	305
PPR_2	PPR repeat family	0.33	1	30.00	284	302
PPR_2	PPR repeat family	8.5E-10	28	30.00	309	343
PPR_3	Pentatricopeptide repeat domain	0.027	4	25.00	310	340
PPR_1	PPR repeat	7.3E-06	15	23.80	310	337
PPR	PPR repeat	4.2E-10	29	25.00	312	341
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0062	5	27.00	327	411
PPR_1	PPR repeat	3.1E-05	13	23.80	376	407
PPR_3	Pentatricopeptide repeat domain	0.0026	7	25.00	376	410
PPR_2	PPR repeat family	3.6E-05	13	30.00	381	411
ATP13	Mitochondrial ATPase expression	0.67	-1	26.70	383	407
RNPP_C	RNPP family C-terminal domain	0.014	4	26.50	383	410
PPR	PPR repeat	1.4E-07	21	25.00	385	411
PPR_1	PPR repeat	1.2E-06	17	23.80	410	439
PPR_3	Pentatricopeptide repeat domain	0.00038	10	25.00	411	443
PPR_2	PPR repeat family	8.2E-12	34	30.00	411	459
PPR	PPR repeat	1.4E-07	21	25.00	413	439
ATP13	Mitochondrial ATPase expression	0.92	-1	26.70	417	436
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0063	5	27.00	423	463
PPR	PPR repeat	0.00032	10	25.00	487	509
PPR_2	PPR repeat family	0.055	3	30.00	487	507
PPR_1	PPR repeat	0.078	2	23.80	487	507
PPR_2	PPR repeat family	1.4E-07	21	30.00	512	549
PPR_1	PPR repeat	0.0032	6	23.80	513	537
PPR_3	Pentatricopeptide repeat domain	0.00037	10	25.00	513	560
PPR	PPR repeat	1.5E-06	18	25.00	515	544
ATP13	Mitochondrial ATPase expression	0.00014	11	26.70	517	580
PPR_long	Pentacotripeptide-repeat region of PRORP	3.7E-05	12	27.00	533	609
PPR_1	PPR repeat	0.017	4	23.80	544	576
PPR_2	PPR repeat family	1.3E-06	18	30.00	547	584
PPR	PPR repeat	1.9E-05	14	25.00	550	577
PPR_1	PPR repeat	2.8E-06	16	23.80	580	610
PPR	PPR repeat	0.0016	8	25.00	591	610
PPR_2	PPR repeat family	0.0015	8	30.00	591	610
PPR_3	Pentatricopeptide repeat domain	0.27	1	25.00	599	627
ATP13	Mitochondrial ATPase expression	0.72	-1	26.70	603	631
PPR	PPR repeat	0.17	2	25.00	659	682