c2pfam

AT4G04720.1 :

Domain Description Evalue Bits GA Start End
Pkinase Protein kinase domain 0 249 20.40 80 338
PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase 5.7E-32 101 23.10 82 334
APH Phosphotransferase enzyme family 0.019 5 22.40 110 161
Kdo Lipopolysaccharide kinase (Kdo/WaaP) family 2.1E-06 17 20.90 151 221
Kinase-like Kinase-like 1E-06 18 25.00 183 326
APH Phosphotransferase enzyme family 0.0049 7 22.40 199 215
EF-hand_8 EF-hand domain pair 6.3E-06 16 28.00 368 411
SPARC_Ca_bdg Secreted protein acidic and rich in cysteine Ca binding region 4.5E-05 14 21.40 371 442
EF-hand_4 Cytoskeletal-regulatory complex EF hand 4.4E-06 17 21.30 377 444
EF-hand_7 EF-hand domain pair 3.5E-15 47 30.00 385 445
EF-hand_5 EF hand 1E-07 22 25.90 385 407
EF-hand_6 EF-hand domain 6.4E-08 22 25.00 385 413
EF-hand_1 EF hand 1.3E-09 27 25.40 385 411
EF-hand_9 EF-hand domain 2.2E-05 15 37.00 387 447
EF-hand_11 EF-hand domain 6.1E-05 14 21.70 387 444
EFhand_Ca_insen Ca2+ insensitive EF hand 0.0081 7 20.80 389 446
EF-hand_8 EF-hand domain pair 4.1E-10 30 28.00 397 445
TerB Tellurite resistance protein TerB 0.00085 10 22.80 414 453
Dockerin_1 Dockerin type I repeat 0.0091 7 20.50 418 437
EF-hand_1 EF hand 2.5E-08 24 25.40 420 444
EF-hand_6 EF-hand domain 8.2E-05 13 25.00 423 444
EF-hand_5 EF hand 0.00023 11 25.90 423 441
EFhand_Ca_insen Ca2+ insensitive EF hand 0.061 4 20.80 455 480
EF-hand_7 EF-hand domain pair 1.6E-18 57 30.00 455 517
SPARC_Ca_bdg Secreted protein acidic and rich in cysteine Ca binding region 9.9E-07 19 21.40 457 514
EF-hand_11 EF-hand domain 0.013 7 21.70 457 518
EF-hand_8 EF-hand domain pair 0.00028 11 28.00 457 482
EF-hand_1 EF hand 1.6E-10 30 25.40 457 483
EF-hand_6 EF-hand domain 7.7E-10 28 25.00 458 484
EF-hand_4 Cytoskeletal-regulatory complex EF hand 2.5E-07 21 21.30 458 517
EF-hand_5 EF hand 2.5E-07 20 25.90 459 479
EF-hand_9 EF-hand domain 8.3E-06 16 37.00 460 517
EF-hand_8 EF-hand domain pair 9.3E-13 38 28.00 469 517
TerB Tellurite resistance protein TerB 0.77 0 22.80 486 522
Dockerin_1 Dockerin type I repeat 0.13 3 20.50 490 508
EF-hand_5 EF hand 7.6E-07 19 25.90 492 512
EF-hand_1 EF hand 4.1E-12 35 25.40 492 518
EF-hand_6 EF-hand domain 3.8E-06 17 25.00 493 519

531

Pkinase
PK_Tyr_Ser-Thr
APH
Kdo
Kinase-like
APH
EF-hand_8
SPARC_Ca_bdg
EF-hand_4
EF-hand_7
EF-hand_5
EF-hand_6
EF-hand_1
EF-hand_9
EF-hand_11
EFhand_Ca_insen
EF-hand_8
TerB
Dockerin_1
EF-hand_1
EF-hand_6
EF-hand_5
EFhand_Ca_insen
EF-hand_7
SPARC_Ca_bdg
EF-hand_11
EF-hand_8
EF-hand_1
EF-hand_6
EF-hand_4
EF-hand_5
EF-hand_9
EF-hand_8
TerB
Dockerin_1
EF-hand_5
EF-hand_1
EF-hand_6

References:

APH
2163618 Cloning of aminoglycoside phosphotransferase (APH) gene from antibiotic- producing strain of Bacillus circulans into a high-expression vector, pKK223-3. Purification, properties and location of the enzyme [published erratum appears in Biochem J 1991 Feb 1 Biochem J 1990;268:671-677.
2167474 PCR cloning of a streptomycin phosphotransferase (aphE) gene from Streptomyces griseus ATCC 12475. Nucleic Acids Res 1990;18:4615-4615.

EF-hand_11

TerB
3049247 The nucleotide sequence of a plasmid determinant for resistance to tellurium anions. Gene 1988;66:245-258.
10069007 In vivo and in vitro cloning and phenotype characterization of tellurite resistance determinant conferred by plasmid pTE53 of a clinical isolate of Escherichia coli. Folia Microbiol (Praha) 1998;43:589-599.

EF-hand_9

SPARC_Ca_bdg
16121393 The C-terminal Ca2+-binding domain of SPARC confers anti-spreading activity to human urothelial cells. J Cell Physiol. 2006;206:211-220.

EF-hand_7

EF-hand_6

EF-hand_5

EF-hand_4

Kinase-like

EF-hand_1

EF-hand_8

Pkinase
1956325 Protein kinase catalytic domain sequence database: identification of conserved features of primary structure and classification of family members. Methods Enzymol 1991;200:38-62.
7768349 Protein kinases 6. The eukaryotic protein kinase superfamily: kinase (catalytic) domain structure and classification. FASEB J 1995;9:576-596.
9020587 The protein kinases of budding yeast: six score and more. Trends Biochem Sci 1997;22:18-22.

Dockerin_1
10390637 The cellulosome concept as an efficient microbial strategy for the degradation of insoluble polysaccharides [In Process Citation] Trends Microbiol 1999;7:275-281.
10898940 Secondary structure and calcium-induced folding of the Clostridium thermocellum dockerin domain determined by NMR spectroscopy. Arch Biochem Biophys 2000;379:237-244.

EFhand_Ca_insen
11573089 Ca2+-independent binding of an EF-hand domain to a novel motif in the alpha-actinin-titin complex. Nat Struct Biol. 2001;8:853-857.

Kdo
11069912 Purification and characterization of WaaP from Escherichia coli, a lipopolysaccharide kinase essential for outer membrane stability. J Biol Chem 2001;276:5498-5504.
12021457 Lipopolysaccharide phosphorylating enzymes encoded in the genomes of Gram-negative bacteria are related to the eukaryotic protein kinases. Protein Sci 2002;11:1580-1584.
10531340 A Haemophilus influenzae gene that encodes a membrane bound 3-deoxy-D-manno-octulosonic acid (Kdo) kinase. Possible involvement of kdo phosphorylation in bacterial virulence. J Biol Chem 1999;274:31391-31400.

PK_Tyr_Ser-Thr

Domain	Description	Evalue	Bits	GA	Start	End
Pkinase	Protein kinase domain	0	249	20.40	80	338
PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	5.7E-32	101	23.10	82	334
APH	Phosphotransferase enzyme family	0.019	5	22.40	110	161
Kdo	Lipopolysaccharide kinase (Kdo/WaaP) family	2.1E-06	17	20.90	151	221
Kinase-like	Kinase-like	1E-06	18	25.00	183	326
APH	Phosphotransferase enzyme family	0.0049	7	22.40	199	215
EF-hand_8	EF-hand domain pair	6.3E-06	16	28.00	368	411
SPARC_Ca_bdg	Secreted protein acidic and rich in cysteine Ca binding region	4.5E-05	14	21.40	371	442
EF-hand_4	Cytoskeletal-regulatory complex EF hand	4.4E-06	17	21.30	377	444
EF-hand_7	EF-hand domain pair	3.5E-15	47	30.00	385	445
EF-hand_5	EF hand	1E-07	22	25.90	385	407
EF-hand_6	EF-hand domain	6.4E-08	22	25.00	385	413
EF-hand_1	EF hand	1.3E-09	27	25.40	385	411
EF-hand_9	EF-hand domain	2.2E-05	15	37.00	387	447
EF-hand_11	EF-hand domain	6.1E-05	14	21.70	387	444
EFhand_Ca_insen	Ca2+ insensitive EF hand	0.0081	7	20.80	389	446
EF-hand_8	EF-hand domain pair	4.1E-10	30	28.00	397	445
TerB	Tellurite resistance protein TerB	0.00085	10	22.80	414	453
Dockerin_1	Dockerin type I repeat	0.0091	7	20.50	418	437
EF-hand_1	EF hand	2.5E-08	24	25.40	420	444
EF-hand_6	EF-hand domain	8.2E-05	13	25.00	423	444
EF-hand_5	EF hand	0.00023	11	25.90	423	441
EFhand_Ca_insen	Ca2+ insensitive EF hand	0.061	4	20.80	455	480
EF-hand_7	EF-hand domain pair	1.6E-18	57	30.00	455	517
SPARC_Ca_bdg	Secreted protein acidic and rich in cysteine Ca binding region	9.9E-07	19	21.40	457	514
EF-hand_11	EF-hand domain	0.013	7	21.70	457	518
EF-hand_8	EF-hand domain pair	0.00028	11	28.00	457	482
EF-hand_1	EF hand	1.6E-10	30	25.40	457	483
EF-hand_6	EF-hand domain	7.7E-10	28	25.00	458	484
EF-hand_4	Cytoskeletal-regulatory complex EF hand	2.5E-07	21	21.30	458	517
EF-hand_5	EF hand	2.5E-07	20	25.90	459	479
EF-hand_9	EF-hand domain	8.3E-06	16	37.00	460	517
EF-hand_8	EF-hand domain pair	9.3E-13	38	28.00	469	517
TerB	Tellurite resistance protein TerB	0.77	0	22.80	486	522
Dockerin_1	Dockerin type I repeat	0.13	3	20.50	490	508
EF-hand_5	EF hand	7.6E-07	19	25.90	492	512
EF-hand_1	EF hand	4.1E-12	35	25.40	492	518
EF-hand_6	EF-hand domain	3.8E-06	17	25.00	493	519