c2pfam

AT4G05310.1 :

Domain Description Evalue Bits GA Start End
Rad60-SLD Ubiquitin-2 like Rad60 SUMO-like 1.4E-05 14 23.70 4 52
ubiquitin Ubiquitin family 2E-17 52 20.70 5 74
TFIIIC_delta Transcription factor IIIC subunit delta N-term 0.0001 11 27.00 59 131
Pallilysin Pallilysin beta barrel domain 0.93 -2 25.00 214 243
Rad60-SLD Ubiquitin-2 like Rad60 SUMO-like 0.51 -1 23.70 216 262
FLYWCH FLYWCH zinc finger domain 4.6E-05 12 20.80 222 256
TMEM71 TMEM71 protein family 4E-05 12 27.00 231 268
ubiquitin Ubiquitin family 0.46 -1 20.70 238 264
TFIIIC_delta Transcription factor IIIC subunit delta N-term 0.83 -2 27.00 276 276
Pallilysin Pallilysin beta barrel domain 0.00014 11 25.00 305 340
ubiquitin Ubiquitin family 0.2 0 20.70 325 339
FLYWCH FLYWCH zinc finger domain 0.21 1 20.80 346 366

415

Rad60-SLD
ubiquitin
TFIIIC_delta
Pallilysin
Rad60-SLD
FLYWCH
TMEM71
ubiquitin
TFIIIC_delta
Pallilysin
ubiquitin
FLYWCH

References:

FLYWCH
12723696 The modifier of mdg4 locus in Drosophila: functional complexity is resolved by trans splicing. Genetica 2003;117:165-177.

ubiquitin
3041007 Structure of ubiquitin refined at 1.8 A resolution. J Mol Biol 1987;194:531-544.
8107144 Structure of tetraubiquitin shows how multiubiquitin chains can be formed. J Mol Biol 1994;236:601-609.
9654451 Structure determination of the small ubiquitin-related modifier SUMO-1. J Mol Biol 1998;280:275-286.
9857030 Crystal structure of the human ubiquitin-like protein NEDD8 and interactions with ubiquitin pathway enzymes. J Biol Chem 1998;273:34983-34991.
12826399 A potential proteasome-interacting motif within the ubiquitin-like domain of parkin and other proteins. Trends Biochem Sci 2003;28:280-283.

TMEM71

Rad60-SLD
15660128 Structures of the SUMO E1 provide mechanistic insights into SUMO activation and E2 recruitment to E1. EMBO J. 2005;24:439-451.
19363481 Molecular mimicry of SUMO promotes DNA repair. Nat Struct Mol Biol. 2009;16:509-516.

Pallilysin

TFIIIC_delta

Domain	Description	Evalue	Bits	GA	Start	End
Rad60-SLD	Ubiquitin-2 like Rad60 SUMO-like	1.4E-05	14	23.70	4	52
ubiquitin	Ubiquitin family	2E-17	52	20.70	5	74
TFIIIC_delta	Transcription factor IIIC subunit delta N-term	0.0001	11	27.00	59	131
Pallilysin	Pallilysin beta barrel domain	0.93	-2	25.00	214	243
Rad60-SLD	Ubiquitin-2 like Rad60 SUMO-like	0.51	-1	23.70	216	262
FLYWCH	FLYWCH zinc finger domain	4.6E-05	12	20.80	222	256
TMEM71	TMEM71 protein family	4E-05	12	27.00	231	268
ubiquitin	Ubiquitin family	0.46	-1	20.70	238	264
TFIIIC_delta	Transcription factor IIIC subunit delta N-term	0.83	-2	27.00	276	276
Pallilysin	Pallilysin beta barrel domain	0.00014	11	25.00	305	340
ubiquitin	Ubiquitin family	0.2	0	20.70	325	339
FLYWCH	FLYWCH zinc finger domain	0.21	1	20.80	346	366