c2pfam

AT1G18485.1 :

Domain Description Evalue Bits GA Start End
PPR PPR repeat 0.28 1 25.00 50 68
PPR_1 PPR repeat 0.074 2 23.80 50 66
PPR_3 Pentatricopeptide repeat domain 1 -2 25.00 121 149
PPR PPR repeat 0.015 5 25.00 123 150
PPR_1 PPR repeat 0.034 3 23.80 150 177
PPR_2 PPR repeat family 1.8E-10 30 30.00 150 198
PPR_3 Pentatricopeptide repeat domain 0.02 4 25.00 150 199
PPR PPR repeat 3.3E-08 22 25.00 154 178
PPR_1 PPR repeat 0.043 2 23.80 183 196
PPR_2 PPR repeat family 4.7E-05 12 30.00 221 253
PPR_1 PPR repeat 0.0028 6 23.80 226 248
PPR PPR repeat 3.9E-05 13 25.00 226 252
PPR_3 Pentatricopeptide repeat domain 0.22 1 25.00 226 265
PPR_1 PPR repeat 0.0016 7 23.80 251 279
PPR_2 PPR repeat family 3.1E-06 16 30.00 252 302
PPR PPR repeat 1.2E-08 24 25.00 254 283
PPR_2 PPR repeat family 0.11 2 30.00 330 351
PPR PPR repeat 0.00097 8 25.00 331 351
PPR_2 PPR repeat family 5.2E-07 19 30.00 356 388
PPR_1 PPR repeat 1.1E-05 14 23.80 357 384
PPR_3 Pentatricopeptide repeat domain 0.71 -1 25.00 357 384
PPR PPR repeat 7.9E-06 15 25.00 359 386
PPR PPR repeat 0.0093 5 25.00 434 459
PPR_1 PPR repeat 0.29 0 23.80 434 454
PPR_2 PPR repeat family 7.1E-10 28 30.00 460 507
PPR_3 Pentatricopeptide repeat domain 0.031 3 25.00 461 507
PPR PPR repeat 4.7E-05 13 25.00 463 491
PPR_1 PPR repeat 0.24 0 23.80 491 505
PPR PPR repeat 0.11 2 25.00 498 519
PPR_3 Pentatricopeptide repeat domain 0.32 0 25.00 528 560
PPR_2 PPR repeat family 0.038 3 30.00 530 562
PPR PPR repeat 0.16 1 25.00 533 560
PPR_2 PPR repeat family 8.3E-08 21 30.00 561 594
PPR_3 Pentatricopeptide repeat domain 0.034 3 25.00 561 588
PPR_1 PPR repeat 5.3E-06 15 23.80 562 589
PPR PPR repeat 1.2E-10 30 25.00 563 593
PPR PPR repeat 0.00057 9 25.00 637 661
PPR_1 PPR repeat 0.073 2 23.80 637 656
PPR_2 PPR repeat family 0.011 5 30.00 637 662
PPR_3 Pentatricopeptide repeat domain 0.42 0 25.00 637 661
PPR_2 PPR repeat family 1.6E-14 43 30.00 662 708
PPR_1 PPR repeat 3.2E-07 19 23.80 665 690
PPR PPR repeat 1E-11 33 25.00 665 693
PPR_long Pentacotripeptide-repeat region of PRORP 5.1E-07 18 27.00 678 762
PPR_3 Pentatricopeptide repeat domain 2.3E-06 16 25.00 684 745
PPR PPR repeat 0.0018 8 25.00 701 726
PPR_2 PPR repeat family 0.0012 8 30.00 705 744
PPR_1 PPR repeat 1 -2 23.80 711 725
PPR_1 PPR repeat 1.1E-07 20 23.80 729 757
PPR_2 PPR repeat family 0.0035 6 30.00 732 758
PPR PPR repeat 0.00056 9 25.00 737 757
PPR PPR repeat 0.02 4 25.00 806 830
DYW_deaminase DYW family of nucleic acid deaminases 2.3E-38 120 31.60 837 960

970

PPR
PPR_1
PPR_3
PPR
PPR_1
PPR_2
PPR_3
PPR
PPR_1
PPR_2
PPR_1
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_2
PPR
PPR_2
PPR_1
PPR_3
PPR
PPR
PPR_1
PPR_2
PPR_3
PPR
PPR_1
PPR
PPR_3
PPR_2
PPR
PPR_2
PPR_3
PPR_1
PPR
PPR
PPR_1
PPR_2
PPR_3
PPR_2
PPR_1
PPR
PPR_long
PPR_3
PPR
PPR_2
PPR_1
PPR_1
PPR_2
PPR
PPR
DYW_deaminase

References:

DYW_deaminase

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
PPR	PPR repeat	0.28	1	25.00	50	68
PPR_1	PPR repeat	0.074	2	23.80	50	66
PPR_3	Pentatricopeptide repeat domain	1	-2	25.00	121	149
PPR	PPR repeat	0.015	5	25.00	123	150
PPR_1	PPR repeat	0.034	3	23.80	150	177
PPR_2	PPR repeat family	1.8E-10	30	30.00	150	198
PPR_3	Pentatricopeptide repeat domain	0.02	4	25.00	150	199
PPR	PPR repeat	3.3E-08	22	25.00	154	178
PPR_1	PPR repeat	0.043	2	23.80	183	196
PPR_2	PPR repeat family	4.7E-05	12	30.00	221	253
PPR_1	PPR repeat	0.0028	6	23.80	226	248
PPR	PPR repeat	3.9E-05	13	25.00	226	252
PPR_3	Pentatricopeptide repeat domain	0.22	1	25.00	226	265
PPR_1	PPR repeat	0.0016	7	23.80	251	279
PPR_2	PPR repeat family	3.1E-06	16	30.00	252	302
PPR	PPR repeat	1.2E-08	24	25.00	254	283
PPR_2	PPR repeat family	0.11	2	30.00	330	351
PPR	PPR repeat	0.00097	8	25.00	331	351
PPR_2	PPR repeat family	5.2E-07	19	30.00	356	388
PPR_1	PPR repeat	1.1E-05	14	23.80	357	384
PPR_3	Pentatricopeptide repeat domain	0.71	-1	25.00	357	384
PPR	PPR repeat	7.9E-06	15	25.00	359	386
PPR	PPR repeat	0.0093	5	25.00	434	459
PPR_1	PPR repeat	0.29	0	23.80	434	454
PPR_2	PPR repeat family	7.1E-10	28	30.00	460	507
PPR_3	Pentatricopeptide repeat domain	0.031	3	25.00	461	507
PPR	PPR repeat	4.7E-05	13	25.00	463	491
PPR_1	PPR repeat	0.24	0	23.80	491	505
PPR	PPR repeat	0.11	2	25.00	498	519
PPR_3	Pentatricopeptide repeat domain	0.32	0	25.00	528	560
PPR_2	PPR repeat family	0.038	3	30.00	530	562
PPR	PPR repeat	0.16	1	25.00	533	560
PPR_2	PPR repeat family	8.3E-08	21	30.00	561	594
PPR_3	Pentatricopeptide repeat domain	0.034	3	25.00	561	588
PPR_1	PPR repeat	5.3E-06	15	23.80	562	589
PPR	PPR repeat	1.2E-10	30	25.00	563	593
PPR	PPR repeat	0.00057	9	25.00	637	661
PPR_1	PPR repeat	0.073	2	23.80	637	656
PPR_2	PPR repeat family	0.011	5	30.00	637	662
PPR_3	Pentatricopeptide repeat domain	0.42	0	25.00	637	661
PPR_2	PPR repeat family	1.6E-14	43	30.00	662	708
PPR_1	PPR repeat	3.2E-07	19	23.80	665	690
PPR	PPR repeat	1E-11	33	25.00	665	693
PPR_long	Pentacotripeptide-repeat region of PRORP	5.1E-07	18	27.00	678	762
PPR_3	Pentatricopeptide repeat domain	2.3E-06	16	25.00	684	745
PPR	PPR repeat	0.0018	8	25.00	701	726
PPR_2	PPR repeat family	0.0012	8	30.00	705	744
PPR_1	PPR repeat	1	-2	23.80	711	725
PPR_1	PPR repeat	1.1E-07	20	23.80	729	757
PPR_2	PPR repeat family	0.0035	6	30.00	732	758
PPR	PPR repeat	0.00056	9	25.00	737	757
PPR	PPR repeat	0.02	4	25.00	806	830
DYW_deaminase	DYW family of nucleic acid deaminases	2.3E-38	120	31.60	837	960