c2pfam

AT1G18660.1 :

Domain Description Evalue Bits GA Start End
TPR_2 Tetratricopeptide repeat 0.0055 8 22.40 44 70
TPR_1 Tetratricopeptide repeat 0.0016 9 20.40 45 65
TPR_11 TPR repeat 3.5E-05 14 26.80 46 83
TPR_8 Tetratricopeptide repeat 0.007 7 25.70 53 70
TPR_8 Tetratricopeptide repeat 0.0026 9 25.70 131 161
TPR_1 Tetratricopeptide repeat 0.21 2 20.40 131 161
TPR_2 Tetratricopeptide repeat 0.0037 8 22.40 132 161
zf-P11 P-11 zinc finger 0.37 1 24.90 185 204
U-box U-box domain 0.0003 11 21.40 192 237
zf-Nse Zinc-finger of the MIZ type in Nse subunit 0.0005 11 20.70 192 233
zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger) 3.2E-12 37 27.00 193 237
zf-RING_2 Ring finger domain 6.7E-11 33 27.30 195 234
zf-RING_6 zf-RING of BARD1-type protein 0.00013 12 35.00 195 238
zf-RING_UBOX RING-type zinc-finger 1.3E-10 32 25.20 196 231
zf-RING_5 zinc-RING finger domain 6.7E-10 29 27.90 196 235
zf-C3HC4_4 zinc finger of C3HC4-type, RING 6.7E-10 30 30.00 196 233
Prok-RING_4 Prokaryotic RING finger family 4 2.2E-08 24 27.00 196 236
zf-RING_10 zinc RING finger of MSL2 2.4E-07 21 31.00 196 235
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 8.8E-12 35 21.00 196 233
zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) 1E-15 48 27.00 196 233
zf-rbx1 RING-H2 zinc finger domain 3E-06 18 31.00 206 234
zf-RING_4 RING/Ubox like zinc-binding domain 8.2E-06 16 27.00 210 235
zf-P11 P-11 zinc finger 0.0027 8 24.90 213 234
LON_substr_bdg ATP-dependent protease La (LON) substrate-binding domain 1.7E-24 77 28.70 280 476

486

TPR_2
TPR_1
TPR_11
TPR_8
TPR_8
TPR_1
TPR_2
zf-P11
U-box
zf-Nse
zf-C3HC4_3
zf-RING_2
zf-RING_6
zf-RING_UBOX
zf-RING_5
zf-C3HC4_4
Prok-RING_4
zf-RING_10
zf-C3HC4
zf-C3HC4_2
zf-rbx1
zf-RING_4
zf-P11
LON_substr_bdg

References:

zf-RING_10

TPR_2
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

TPR_1
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

zf-C3HC4_2

zf-C3HC4
8804826 The RING finger domain: a recent example of a sequence-structure family. Curr Opin Struct Biol 1996;6:395-401.
10500182 RING fingers mediate ubiquitin-conjugating enzyme (E2)-dependent ubiquitination. Proc Natl Acad Sci U S A 1999;96:11364-11369.

TPR_11

zf-RING_UBOX

U-box
10704423 The U box is a modified RING finger - a common domain in ubiquitination. Curr Biol 2000;10:132-134.

zf-RING_6

zf-RING_5

zf-RING_4

zf-RING_2

zf-rbx1

LON_substr_bdg

zf-C3HC4_4

zf-C3HC4_3

Prok-RING_4

zf-P11

zf-Nse
12966087 Novel essential DNA repair proteins Nse1 and Nse2 are subunits of the fission yeast Smc5-Smc6 complex. J Biol Chem 2003;278:45460-45467.

TPR_8

Domain	Description	Evalue	Bits	GA	Start	End
TPR_2	Tetratricopeptide repeat	0.0055	8	22.40	44	70
TPR_1	Tetratricopeptide repeat	0.0016	9	20.40	45	65
TPR_11	TPR repeat	3.5E-05	14	26.80	46	83
TPR_8	Tetratricopeptide repeat	0.007	7	25.70	53	70
TPR_8	Tetratricopeptide repeat	0.0026	9	25.70	131	161
TPR_1	Tetratricopeptide repeat	0.21	2	20.40	131	161
TPR_2	Tetratricopeptide repeat	0.0037	8	22.40	132	161
zf-P11	P-11 zinc finger	0.37	1	24.90	185	204
U-box	U-box domain	0.0003	11	21.40	192	237
zf-Nse	Zinc-finger of the MIZ type in Nse subunit	0.0005	11	20.70	192	233
zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	3.2E-12	37	27.00	193	237
zf-RING_2	Ring finger domain	6.7E-11	33	27.30	195	234
zf-RING_6	zf-RING of BARD1-type protein	0.00013	12	35.00	195	238
zf-RING_UBOX	RING-type zinc-finger	1.3E-10	32	25.20	196	231
zf-RING_5	zinc-RING finger domain	6.7E-10	29	27.90	196	235
zf-C3HC4_4	zinc finger of C3HC4-type, RING	6.7E-10	30	30.00	196	233
Prok-RING_4	Prokaryotic RING finger family 4	2.2E-08	24	27.00	196	236
zf-RING_10	zinc RING finger of MSL2	2.4E-07	21	31.00	196	235
zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	8.8E-12	35	21.00	196	233
zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	1E-15	48	27.00	196	233
zf-rbx1	RING-H2 zinc finger domain	3E-06	18	31.00	206	234
zf-RING_4	RING/Ubox like zinc-binding domain	8.2E-06	16	27.00	210	235
zf-P11	P-11 zinc finger	0.0027	8	24.90	213	234
LON_substr_bdg	ATP-dependent protease La (LON) substrate-binding domain	1.7E-24	77	28.70	280	476