c2pfam

AT4G08980.1 :

Domain Description Evalue Bits GA Start End
F-box F-box domain 1.5E-08 23 20.50 9 54
F-box-like F-box-like 1.2E-09 27 24.30 17 56
LRR_1 Leucine Rich Repeat 0.49 1 20.60 83 105
RsmF_methylt_CI RsmF rRNA methyltransferase first C-terminal domain 0.0041 6 27.00 102 118
LRR_6 Leucine Rich repeat 0.9 -1 23.40 108 124
LRR_4 Leucine Rich repeats (2 copies) 0.004 7 27.00 127 145
LRR_6 Leucine Rich repeat 5.6E-06 15 23.40 131 152
LRR_1 Leucine Rich Repeat 0.0022 8 20.60 132 150
LRR_4 Leucine Rich repeats (2 copies) 0.0033 7 27.00 132 169
F-box F-box domain 0.28 0 20.50 156 165
RsmF_methylt_CI RsmF rRNA methyltransferase first C-terminal domain 0.022 4 27.00 162 196
LRR_4 Leucine Rich repeats (2 copies) 0.42 0 27.00 187 196
LRR_4 Leucine Rich repeats (2 copies) 0.54 0 27.00 189 224
LRR_6 Leucine Rich repeat 0.00029 10 23.40 189 209
F-box F-box domain 0.44 -1 20.50 200 223
LRR_6 Leucine Rich repeat 0.79 -1 23.40 215 225
LRR_1 Leucine Rich Repeat 0.086 3 20.60 216 235
LRR_4 Leucine Rich repeats (2 copies) 0.87 -1 27.00 216 244

317

F-box
F-box-like
LRR_1
RsmF_methylt_CI
LRR_6
LRR_4
LRR_6
LRR_1
LRR_4
F-box
RsmF_methylt_CI
LRR_4
LRR_4
LRR_6
F-box
LRR_6
LRR_1
LRR_4

References:

F-box-like

LRR_4

F-box
8706131 SKP1 connects cell cycle regulators to the ubiquitin proteolysis machinery through a novel motif, the F-box. Cell 1996;86:263-274.
9346238 F-box proteins are receptors that recruit phosphorylated substrates to the SCF ubiquitin-ligase complex. Cell. 1997;91:209-219.

RsmF_methylt_CI

LRR_6

LRR_1
7817399 The leucine-rich repeat: a versatile binding motif. Trends Biochem Sci 1994;19:415-421.
8264799 Crystal structure of porcine ribonuclease inhibitor, a protein with leucine-rich repeats. Nature 1993;366:751-756.

Domain	Description	Evalue	Bits	GA	Start	End
F-box	F-box domain	1.5E-08	23	20.50	9	54
F-box-like	F-box-like	1.2E-09	27	24.30	17	56
LRR_1	Leucine Rich Repeat	0.49	1	20.60	83	105
RsmF_methylt_CI	RsmF rRNA methyltransferase first C-terminal domain	0.0041	6	27.00	102	118
LRR_6	Leucine Rich repeat	0.9	-1	23.40	108	124
LRR_4	Leucine Rich repeats (2 copies)	0.004	7	27.00	127	145
LRR_6	Leucine Rich repeat	5.6E-06	15	23.40	131	152
LRR_1	Leucine Rich Repeat	0.0022	8	20.60	132	150
LRR_4	Leucine Rich repeats (2 copies)	0.0033	7	27.00	132	169
F-box	F-box domain	0.28	0	20.50	156	165
RsmF_methylt_CI	RsmF rRNA methyltransferase first C-terminal domain	0.022	4	27.00	162	196
LRR_4	Leucine Rich repeats (2 copies)	0.42	0	27.00	187	196
LRR_4	Leucine Rich repeats (2 copies)	0.54	0	27.00	189	224
LRR_6	Leucine Rich repeat	0.00029	10	23.40	189	209
F-box	F-box domain	0.44	-1	20.50	200	223
LRR_6	Leucine Rich repeat	0.79	-1	23.40	215	225
LRR_1	Leucine Rich Repeat	0.086	3	20.60	216	235
LRR_4	Leucine Rich repeats (2 copies)	0.87	-1	27.00	216	244